Literature DB >> 7798231

Transition state structures for the hydrolysis of alpha-D-glucopyranosyl fluoride by retaining and inverting reactions of glycosylases.

Y Tanaka1, W Tao, J S Blanchard, E J Hehre.   

Abstract

Secondary tritium and primary 14C kinetic isotope effects were measured for the hydrolysis of alpha-D-glucopyranosyl fluoride catalyzed by sugar beet seed alpha-D-glucosidase, forming alpha-D-glucose, and by Rhizopus niveus glucoamylase forming beta-D-glucose. The data provided a novel opportunity to model and directly compare the transition state structures for the hydrolysis of a substrate promoted with retention or inversion of configuration according to the enzyme catalyst. The isotope effects for the reaction catalyzed by each enzyme are most consistent with an SN1 rather than an SN2 mechanism. The modeled transition state structures for the hydrolysis promoted by the alpha-glucosidase and the glucoamylase both bear significant oxocarbonium ion character, with the D-glucosyl residue having a flattened 4C1 conformation and a C-1-O-5 bond order of 1.92, even though opposite D-glucose anomers were produced from the substrate. The transition states show some modest differences, but their general similarity strongly suggests that the stereochemical outcome of glycosylase reactions does not predict the transition state structure, nor does the transition state structure of such reactions predict the stereochemical outcome. The results support previously reported evidence for the separate topological control of product configuration by protein structures in these and other glycosylases.

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Year:  1994        PMID: 7798231

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  9 in total

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Authors:  U Christensen
Journal:  Biochem J       Date:  2000-07-15       Impact factor: 3.857

2.  Conformational plasticity of glycogenin and its maltosaccharide substrate during glycogen biogenesis.

Authors:  Apirat Chaikuad; D Sean Froese; Georgina Berridge; Frank von Delft; Udo Oppermann; Wyatt W Yue
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

3.  A direct NMR method for the measurement of competitive kinetic isotope effects.

Authors:  Jefferson Chan; Andrew R Lewis; Michel Gilbert; Marie-France Karwaski; Andrew J Bennet
Journal:  Nat Chem Biol       Date:  2010-04-25       Impact factor: 15.040

4.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

5.  Purification, enzymatic characterization, and nucleotide sequence of a high-isoelectric-point alpha-glucosidase from barley malt.

Authors:  T P Frandsen; F Lok; E Mirgorodskaya; P Roepstorff; B Svensson
Journal:  Plant Physiol       Date:  2000-05       Impact factor: 8.340

6.  Identification, molecular and biochemical characterization of a novel thermoactive and thermostable glucoamylase from Thermoanaerobacter ethanolicus.

Authors:  Natael M Wayllace; Nicolas Hedín; María V Busi; Diego F Gomez-Casati
Journal:  Biotechnol Lett       Date:  2022-08-23       Impact factor: 2.716

7.  Transition State Structure for the Hydrolysis of NAD Catalyzed by Diphtheria Toxin.

Authors:  Paul J Berti; Steven R Blanke; Vern L Schramm
Journal:  J Am Chem Soc       Date:  1997-12-17       Impact factor: 15.419

8.  Structural and enzymatic analysis of MshA from Corynebacterium glutamicum: substrate-assisted catalysis.

Authors:  Matthew W Vetting; Patrick A Frantom; John S Blanchard
Journal:  J Biol Chem       Date:  2008-04-04       Impact factor: 5.157

9.  Characterization of SdGA, a cold-adapted glucoamylase from Saccharophagus degradans.

Authors:  Natael M Wayllace; Nicolas Hedín; María V Busi; Diego F Gomez-Casati
Journal:  Biotechnol Rep (Amst)       Date:  2021-05-04
  9 in total

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