Literature DB >> 7787423

Complete 1H, 13C and 15N NMR assignments and secondary structure of the 269-residue serine protease PB92 from Bacillus alcalophilus.

R H Fogh1, D Schipper, R Boelens, R Kaptein.   

Abstract

The 1H, 13C and 15N NMR resonances of serine protease PB92 have been assigned using 3D triple-resonance NMR techniques. With a molecular weight of 27 kDa (269 residues) this protein is one of the largest monomeric proteins assigned so far. The side-chain assignments were based mainly on 3D H(C)CH and 3D (H)CCH COSY and TOCSY experiments. The set of assignments encompasses all backbone carbonyl and CHn carbons, all amide (NH and NH2) nitrogens and 99.2% of the amide and CHn protons. The secondary structure and general topology appear to be identical to those found in the crystal structure of serine protease PB92 [Van der Laan et al. (1992) Protein Eng., 5, 405-411], as judged by chemical shift deviations from random coil values, NH exchange data and analysis of NOEs between backbone NH groups.

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Year:  1995        PMID: 7787423     DOI: 10.1007/bf00211753

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  28 in total

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Authors:  A L Morris; M W MacArthur; E G Hutchinson; J M Thornton
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Review 3.  Protein engineering. The design, synthesis and characterization of factitious proteins.

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Review 4.  Prospects for NMR of large proteins.

Authors:  G Wagner
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5.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

6.  Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta.

Authors:  D Marion; P C Driscoll; L E Kay; P T Wingfield; A Bax; A M Gronenborn; G M Clore
Journal:  Biochemistry       Date:  1989-07-25       Impact factor: 3.162

7.  1H, 13C, and 15N assignments and secondary structure of the FK506 binding protein when bound to ascomycin.

Authors:  R X Xu; D Nettesheim; E T Olejniczak; R Meadows; G Gemmecker; S W Fesik
Journal:  Biopolymers       Date:  1993-04       Impact factor: 2.505

8.  1H, 13C, and 15N NMR backbone assignments and secondary structure of human interferon-gamma.

Authors:  S Grzesiek; H Döbeli; R Gentz; G Garotta; A M Labhardt; A Bax
Journal:  Biochemistry       Date:  1992-09-08       Impact factor: 3.162

9.  P NMR and mass spectrometry of atropinesterase and some serine proteases phosphorylated with a transition-state analogue.

Authors:  A C van der Drift; H C Beck; W H Dekker; A G Hulst; E R Wils
Journal:  Biochemistry       Date:  1985-11-19       Impact factor: 3.162

10.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

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  7 in total

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Authors:  Haiyan Zhang; Stephen Neal; David S Wishart
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Authors:  J Engelke; H Rüterjans
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3.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

4.  Resonance assignments for Oncostatin M, a 24-kDa alpha-helical protein.

Authors:  R C Hoffman; F J Moy; V Price; J Richardson; D Kaubisch; E A Frieden; J D Krakover; B J Castner; J King; C J March; R Powers
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5.  NMR structure determination of the tetramerization domain of the Mnt repressor: An asymmetric alpha-helical assembly in slow exchange.

Authors:  I M Nooren; A V George; R Kaptein; R T Sauer; R Boelens
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

6.  Side chain dynamics monitored by 13C-13C cross-relaxation.

Authors:  Klaartje Houben; Rolf Boelens
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

7.  Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysis.

Authors:  Shanshan Wu; Tam T T N Nguyen; Olga V Moroz; Johan P Turkenburg; Jens E Nielsen; Keith S Wilson; Kasper D Rand; Kaare Teilum
Journal:  PeerJ       Date:  2020-06-26       Impact factor: 2.984

  7 in total

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