Literature DB >> 7774559

An expanded system of restriction landmark genomic scanning (RLGS Ver. 1.8).

Y Okazaki1, H Okuizumi, N Sasaki, T Ohsumi, J Kuromitsu, N Hirota, M Muramatsu, Y Hayashizaki.   

Abstract

The restriction landmark genomic scanning (RLGS) method is a high-speed genome scanning system which is based on the concept that restriction enzyme sites can be used as landmarks throughout the genome. It employs direct end-labeling of the genomic DNA digested with a rare-cutting restriction enzyme, followed by high-resolutional two-dimensional electrophoresis. Recently, this system was further developed to lower cost and to simplify the procedure. This paper reviews the RLGS principle and the breakthroughs enabling its further development. Also presented is the precise protocol of the newest version (RLGS Ver. 1.8) that offers cost effectiveness and an expanded production system. Finally, the advantages of this new RLGS method and prospects for its widespread application are discussed.

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Year:  1995        PMID: 7774559     DOI: 10.1002/elps.1150160134

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  18 in total

1.  A unique configuration of genome-wide DNA methylation patterns in the testis.

Authors:  C C Oakes; S La Salle; D J Smiraglia; B Robaire; J M Trasler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

Review 2.  Applying whole-genome studies of epigenetic regulation to study human disease.

Authors:  J D Lieb; S Beck; M L Bulyk; P Farnham; N Hattori; S Henikoff; X S Liu; K Okumura; K Shiota; T Ushijima; J M Greally
Journal:  Cytogenet Genome Res       Date:  2006       Impact factor: 1.636

3.  Comparison of comparative genomic hybridization technologies across microarray platforms.

Authors:  Susan D Hester; Laura Reid; Norma Nowak; Wendell D Jones; Joel S Parker; Kevin Knudtson; William Ward; Jay Tiesman; Nancy D Denslow
Journal:  J Biomol Tech       Date:  2009-04

Review 4.  Quantitative assessment of DNA methylation: Potential applications for disease diagnosis, classification, and prognosis in clinical settings.

Authors:  Romulo Martin Brena; Tim Hui-Ming Huang; Christoph Plass
Journal:  J Mol Med (Berl)       Date:  2006-01-17       Impact factor: 4.599

5.  Epigenetic regulation of the tumor suppressor gene TCF21 on 6q23-q24 in lung and head and neck cancer.

Authors:  Laura T Smith; Mauting Lin; Romulo M Brena; James C Lang; David E Schuller; Gregory A Otterson; Carl D Morrison; Dominic J Smiraglia; Christoph Plass
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-13       Impact factor: 11.205

6.  A novel role for mitochondria in regulating epigenetic modification in the nucleus.

Authors:  Dominic J Smiraglia; Mariola Kulawiec; Gaia L Bistulfi; Sampa Ghoshal Gupta; Keshav K Singh
Journal:  Cancer Biol Ther       Date:  2008-08-01       Impact factor: 4.742

Review 7.  DNA methylation of cancer genome.

Authors:  Hoi-Hung Cheung; Tin-Lap Lee; Owen M Rennert; Wai-Yee Chan
Journal:  Birth Defects Res C Embryo Today       Date:  2009-12

8.  Aging results in hypermethylation of ribosomal DNA in sperm and liver of male rats.

Authors:  Christopher C Oakes; Dominic J Smiraglia; Christoph Plass; Jacquetta M Trasler; Bernard Robaire
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

9.  Haploinsufficiency of the paternal-effect gene Dnmt3L results in transient DNA hypomethylation in progenitor cells of the male germline.

Authors:  K M Niles; J R Yeh; D Chan; M Landry; M C Nagano; J M Trasler
Journal:  Hum Reprod       Date:  2012-11-15       Impact factor: 6.918

10.  Suppression of the protein tyrosine phosphatase receptor type O gene (PTPRO) by methylation in hepatocellular carcinomas.

Authors:  Tasneem Motiwala; Kalpana Ghoshal; Anindita Das; Sarmila Majumder; Dieter Weichenhan; Yue-Zhong Wu; Kristen Holman; S Jill James; Samson T Jacob; Christoph Plass
Journal:  Oncogene       Date:  2003-09-25       Impact factor: 9.867

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