Literature DB >> 7769025

Detection of HIV-1 RNA in plasma and serum samples using the NASBA amplification system compared to RNA-PCR.

A M Vandamme1, S Van Dooren, W Kok, P Goubau, K Fransen, T Kievits, J C Schmit, E De Clercq, J Desmyter.   

Abstract

The presence of HIV-1 RNA in the plasma and serum of European and African patients was monitored using RNA-polymerase chain reaction (RNA-PCR) and the new isothermal NASBA nucleic acid amplification system encompassing a gel-based detection assay (ELGA). Identical RNA extraction procedures, provided by the NASBA amplification system, were used for both methods. The detection limit for HIV-1 RNA, measured on a 10-fold dilution series of spiked HIVIIIB in negative plasma, was about 0.05 CCID50 per test for both methods. Both NASBA and RNA-PCR were more sensitive than a p24 assay for the detection of circulating HIV-1 virus in blood: 17 of the 34 (50%) p24 antigen-tested seropositives were p24-positive while 32 (94%) were positive by NASBA and 30 (88%) by RNA-PCR. Among the 45 seropositives, 34 of which were tested for p24 antigen, 43 (96%) were positive by NASBA and 41 (91%) by RNA-PCR. Almost all seropositives had a detectable viral load in 100 microliters plasma. Lower viral loads were only encountered in some healthy seropositives with a higher CD4 count. There was no cross-reactivity with HIV-2 or HIV-I with both the RNA-PCR and NASBA. The extraction method used permitted the detection of HIV-1 RNA equally well in serum and in plasma with heparin or EDTA.

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Year:  1995        PMID: 7769025     DOI: 10.1016/0166-0934(94)00151-6

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  15 in total

1.  Anticoagulants interfere with PCR used to diagnose invasive aspergillosis.

Authors:  Marta E García; Jose L Blanco; Jesús Caballero; Domingo Gargallo-Viola
Journal:  J Clin Microbiol       Date:  2002-04       Impact factor: 5.948

Review 2.  Strategies for signal amplification in nucleic acid detection.

Authors:  S C Andras; J B Power; E C Cocking; M R Davey
Journal:  Mol Biotechnol       Date:  2001-09       Impact factor: 2.695

3.  Ligation with nucleic acid sequence-based amplification.

Authors:  Carmichael Ong; Warren Tai; Aartik Sarma; Steven M Opal; Andrew W Artenstein; Anubhav Tripathi
Journal:  J Mol Diagn       Date:  2012-03-23       Impact factor: 5.568

4.  A simple method for amplifying RNA targets (SMART).

Authors:  Stephanie E McCalla; Carmichael Ong; Aartik Sarma; Steven M Opal; Andrew W Artenstein; Anubhav Tripathi
Journal:  J Mol Diagn       Date:  2012-06-11       Impact factor: 5.568

5.  Subtyping clinical specimens of influenza A virus by use of a simple method to amplify RNA targets.

Authors:  Jingjing Wang; Warren Tai; Stephanie L Angione; Amrita R John; Steven M Opal; Andrew W Artenstein; Anubhav Tripathi
Journal:  J Clin Microbiol       Date:  2013-07-31       Impact factor: 5.948

6.  Cerebrospinal and peripheral human immunodeficiency virus type 1 load in a multisite, randomized, double-blind, placebo-controlled trial of D-Ala1-peptide T-amide for HIV-1-associated cognitive-motor impairment.

Authors:  Karl Goodkin; Benedetto Vitiello; William D Lyman; Deshratn Asthana; J Hampton Atkinson; Peter N R Heseltine; Rebeca Molina; Wenli Zheng; Imad Khamis; Frances L Wilkie; Paul Shapshak
Journal:  J Neurovirol       Date:  2006-06       Impact factor: 2.643

7.  Detection of HIV-1 minority variants containing the K103N drug-resistance mutation using a simple method to amplify RNA targets (SMART).

Authors:  Kenneth Morabito; Rami Kantor; Warren Tai; Leeann Schreier; Anubhav Tripathi
Journal:  J Mol Diagn       Date:  2013-03-29       Impact factor: 5.568

8.  Evaluation of performance of the Gen-Probe human immunodeficiency virus type 1 viral load assay using primary subtype A, C, and D isolates from Kenya.

Authors:  S Emery; S Bodrug; B A Richardson; C Giachetti; M A Bott; D Panteleeff; L L Jagodzinski; N L Michael; R Nduati; J Bwayo; J K Kreiss; J Overbaugh
Journal:  J Clin Microbiol       Date:  2000-07       Impact factor: 5.948

Review 9.  Application of nucleic acid amplification in clinical microbiology.

Authors:  G Lisby
Journal:  Mol Biotechnol       Date:  1999-08       Impact factor: 2.695

10.  Design and evaluation of a human immunodeficiency virus type 1 RNA assay using nucleic acid sequence-based amplification technology able to quantify both group M and O viruses by using the long terminal repeat as target.

Authors:  M P de Baar; A M van der Schoot; J Goudsmit; F Jacobs; R Ehren; K H van der Horn; P Oudshoorn; F de Wolf; A de Ronde
Journal:  J Clin Microbiol       Date:  1999-06       Impact factor: 5.948

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