Literature DB >> 7765833

The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas.

P A Williams1, J R Sayers.   

Abstract

The organisation and nucleotide sequences coding for the catabolism of benzene, toluene (and xylenes), naphthalene and biphenyl via catechol and the extradiol (meta) cleavage pathway in Pseudomonas are reviewed and the various factors which may have played a part in their evolution are considered. The data suggests that the complete pathways have evolved in a modular way probably from at least three elements. The common meta pathway operons, downstream from the ferredoxin-like protein adjacent to the gene for catechol 2,3-dioxygenase, are highly homologous and clearly share a common ancestry. This common module may have become fused to a gene or genes the product(s) of which could convert a stable chemical (benzoate, salicylate, toluene, benzene, phenol) to catechol, thus forming the lower pathway operons found in modern strains. The upper pathway operons might then have been acquired as a third module at a later stage thus increasing the catabolic versatility of the host strains.

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Year:  1994        PMID: 7765833     DOI: 10.1007/BF00696460

Source DB:  PubMed          Journal:  Biodegradation        ISSN: 0923-9820            Impact factor:   3.909


  88 in total

1.  Location and sequence of the todF gene encoding 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in Pseudomonas putida F1.

Authors:  F M Menn; G J Zylstra; D T Gibson
Journal:  Gene       Date:  1991-07-31       Impact factor: 3.688

2.  Promoter-upstream activator sequences are required for expression of the xylS gene and upper-pathway operon on the Pseudomonas TOL plasmid.

Authors:  A Holtel; M A Abril; S Marques; K N Timmis; J L Ramos
Journal:  Mol Microbiol       Date:  1990-09       Impact factor: 3.501

3.  Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes.

Authors:  L K Chatfield; P A Williams
Journal:  J Bacteriol       Date:  1986-11       Impact factor: 3.490

4.  Plasmid gene organization: naphthalene/salicylate oxidation.

Authors:  K M Yen; I C Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

5.  Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates.

Authors:  J R van der Meer; R I Eggen; A J Zehnder; W M de Vos
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

6.  In vitro analysis of polypeptide requirements of multicomponent phenol hydroxylase from Pseudomonas sp. strain CF600.

Authors:  J Powlowski; V Shingler
Journal:  J Bacteriol       Date:  1990-12       Impact factor: 3.490

7.  Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

Authors:  K Kimbara; T Hashimoto; M Fukuda; T Koana; M Takagi; M Oishi; K Yano
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

8.  Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51.

Authors:  J R van der Meer; A J Zehnder; W M de Vos
Journal:  J Bacteriol       Date:  1991-11       Impact factor: 3.490

9.  Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1.

Authors:  K Taira; N Hayase; N Arimura; S Yamashita; T Miyazaki; K Furukawa
Journal:  Biochemistry       Date:  1988-05-31       Impact factor: 3.162

10.  cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily.

Authors:  E Neidle; C Hartnett; L N Ornston; A Bairoch; M Rekik; S Harayama
Journal:  Eur J Biochem       Date:  1992-02-15
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  52 in total

1.  Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated sites in Belarus.

Authors:  V S Sentchilo; A N Perebituk; A J Zehnder; J R van der Meer
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

2.  Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1.

Authors:  Masahiro Sota; Masahiro Endo; Keiji Nitta; Haruhiko Kawasaki; Masataka Tsuda
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

3.  Identification and characterization of Tn4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53.

Authors:  M Tsuda; H Genka
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

Review 4.  Bacterial transcriptional regulators for degradation pathways of aromatic compounds.

Authors:  David Tropel; Jan Roelof van der Meer
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

5.  Novel organization of catechol meta pathway genes in the nitrobenzene degrader Comamonas sp. JS765 and its evolutionary implication.

Authors:  Zhongqi He; Rebecca E Parales; Jim C Spain; Glenn R Johnson
Journal:  J Ind Microbiol Biotechnol       Date:  2006-09-01       Impact factor: 3.346

6.  Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases.

Authors:  Robert Witzig; Howard Junca; Hans-Jürgen Hecht; Dietmar H Pieper
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

7.  The protective role of endogenous bacterial communities in chironomid egg masses and larvae.

Authors:  Yigal Senderovich; Malka Halpern
Journal:  ISME J       Date:  2013-06-27       Impact factor: 10.302

8.  Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment.

Authors:  C O Jeon; W Park; P Padmanabhan; C DeRito; J R Snape; E L Madsen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-03       Impact factor: 11.205

9.  Characterization of the 4-hydroxybenzoyl-coenzyme A thioesterase from Arthrobacter sp. strain SU.

Authors:  Zhihao Zhuang; Karl-Heinz Gartemann; Rudolf Eichenlaub; Debra Dunaway-Mariano
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

10.  Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31.

Authors:  A E Mars; J Kingma; S R Kaschabek; W Reineke; D B Janssen
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

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