Literature DB >> 7763495

Nucleotide sequence of the Clostridium stercorarium xylA gene encoding a bifunctional protein with beta-D-xylosidase and alpha-L-arabinofuranosidase activities, and properties of the translated product.

K Sakka1, K Yoshikawa, Y Kojima, S Karita, K Ohmiya, K Shimada.   

Abstract

The nucleotides of the beta-xylosidase (xylA) gene from Clostridium stercorarium were sequenced. A single open reading frame of 473 codons specifying the subunit (MW 53,340) of xylosidase was identified. The N-terminal amino acid sequence and molecular weight estimated by SDS-polyacrylamide gel electrophoresis of the purified enzyme were quite in agreement with those deduced from the nucleotide sequence. Analysis of the enzyme by gel filtration on an HPLC column gave a molecular weight of 220,000, suggesting that the native enzyme is a tetramer composed of 4 identical subunits. The pH optimum was 7.0 and quite stable over the pH range of 5 to 10 at 4 degrees C. The optimum temperature was 65 degrees C. Vm was estimated to be 5.9 nmol/min/micrograms for p-nitrophenyl-beta-D-xylopyranoside and 16.7 nmol/min/micrograms for p-nitrophenyl-alpha-L-arabinofuranoside, while Km was estimated to be 2.5 mM for p-nitrophenyl-beta-D-xylopyranoside and 17.6 mM for p-nitrophenyl-alpha-L-arabinofuranoside.

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Year:  1993        PMID: 7763495

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  14 in total

1.  Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.

Authors:  Shosuke Yoshida; Charles W Hespen; Robert L Beverly; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

2.  Functional association of catalytic and ancillary modules dictates enzymatic activity in glycoside hydrolase family 43 β-xylosidase.

Authors:  Sarah Moraïs; Orly Salama-Alber; Yoav Barak; Yitzhak Hadar; David B Wilson; Raphael Lamed; Yuval Shoham; Edward A Bayer
Journal:  J Biol Chem       Date:  2012-01-23       Impact factor: 5.157

3.  Novel bifunctional alpha-L-arabinofuranosidase/xylobiohydrolase (ABF3) from Penicillium purpurogenum.

Authors:  María Cristina Ravanal; Eduardo Callegari; Jaime Eyzaguirre
Journal:  Appl Environ Microbiol       Date:  2010-06-18       Impact factor: 4.792

4.  Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase.

Authors:  Klaus Hövel; Dalia Shallom; Karsten Niefind; Valery Belakhov; Gil Shoham; Timor Baasov; Yuval Shoham; Dietmar Schomburg
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

5.  Biochemical properties of a beta-xylosidase from Clostridium cellulolyticum.

Authors:  S Saxena; H P Fierobe; C Gaudin; F Guerlesquin; J P Belaich
Journal:  Appl Environ Microbiol       Date:  1995-09       Impact factor: 4.792

6.  Purification and characterization of an arabinofuranosidase from Bacillus polymyxa expressed in Bacillus subtilis.

Authors:  P Morales; J M Sendra; J A Pérez-González
Journal:  Appl Microbiol Biotechnol       Date:  1995-12       Impact factor: 4.813

7.  Purification and properties of a xylan-binding endoxylanase from Alkaliphilic bacillus sp. strain K-1.

Authors:  K Ratanakhanokchai; K L Kyu; M Tanticharoen
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

8.  Identification and characterization of clustered genes for thermostable xylan-degrading enzymes, beta-xylosidase and xylanase, of Bacillus stearothermophilus 21.

Authors:  T Baba; R Shinke; T Nanmori
Journal:  Appl Environ Microbiol       Date:  1994-07       Impact factor: 4.792

9.  Purification of Thermotoga maritima enzymes for the degradation of cellulosic materials.

Authors:  K Bronnenmeier; A Kern; W Liebl; W L Staudenbauer
Journal:  Appl Environ Microbiol       Date:  1995-04       Impact factor: 4.792

10.  A xylan hydrolase gene cluster in Prevotella ruminicola B(1)4: sequence relationships, synergistic interactions, and oxygen sensitivity of a novel enzyme with exoxylanase and beta-(1,4)-xylosidase activities.

Authors:  A Gasparic; J Martin; A S Daniel; H J Flint
Journal:  Appl Environ Microbiol       Date:  1995-08       Impact factor: 4.792

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