Literature DB >> 7760931

Transition-state stabilization as a measure of the efficiency of antibody catalysis.

J D Stewart1, S J Benkovic.   

Abstract

There are now about 60 examples of reactions that have been successfully catalysed by monoclonal antibodies. Not surprisingly, many of the early examples involved reactions that were already favoured kinetically (such as carbonate and ester hydrolysis). But it has since been shown that antibodies can also accelerate reaction pathways that are normally disfavoured kinetically (by at least a few kcal mol-1). Here we use transition-state theory to provide a quantitative analysis of the scope and limitations of antibody catalysis. We show that the observed rate accelerations can be predicted from the ratio of equilibrium binding constants of the reaction substrate and the transition-state analogue used to raise the antibody. This scheme allows us to rationalize the product selectivity displayed in antibody catalysis of disfavoured reactions, to predict the degree of rate acceleration that catalytic antibodies may ultimately afford, and to highlight some differences between the way that they and enzymes catalyse reactions.

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Year:  1995        PMID: 7760931     DOI: 10.1038/375388a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  13 in total

1.  Evidence for 'lock and key' character in an anti-phosphonate hydrolytic antibody catalytic site augmented by non-reaction centre recognition: variation in substrate selectivity between an anti-phosphonate antibody, an anti-phosphate antibody and two hydrolytic enzymes.

Authors:  Sanjiv Sonkaria; Guillaume Boucher; José Flórez-Olvarez; Bilal Said; Syeed Hussain; Elizabeth L Ostler; Sheraz Gul; Emrys W Thomas; Marina Resmini; Gerard Gallacher; Keith Brocklehurst
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

2.  Specific recognition of a tetrahedral phosphonamidate transition state analogue group by a recombinant antibody Fab fragment.

Authors:  T D Hua; F Lamaty; C Souriau; V Rolland-Fulcrand; R Lazaro; P Viallefont; M P Lefranc; M Weill
Journal:  Amino Acids       Date:  1996-06       Impact factor: 3.520

3.  A general assay for antibody catalysis using acridone as a fluorescent tag.

Authors:  J L Reymond; T Koch; J Schröer; E Tierney
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-30       Impact factor: 11.205

4.  Phage display of a catalytic antibody to optimize affinity for transition-state analog binding.

Authors:  M Baca; T S Scanlan; R C Stephenson; J A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-16       Impact factor: 11.205

5.  Computational Studies of Candida Antarctica Lipase B to Test Its Capability as a Starting Point To Redesign New Diels-Alderases.

Authors:  Katarzyna Świderek; Vicent Moliner
Journal:  J Phys Chem B       Date:  2015-12-15       Impact factor: 2.991

6.  Catalytic role of enzymes: short strong H-bond-induced partial proton shuttles and charge redistributions.

Authors:  K S Kim; K S Oh; J Y Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

7.  A novel strategy for generating monoclonal antibodies from single, isolated lymphocytes producing antibodies of defined specificities.

Authors:  J S Babcook; K B Leslie; O A Olsen; R A Salmon; J W Schrader
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

8.  Induced-fit catalysis of corannulene bowl-to-bowl inversion.

Authors:  Michal Juríček; Nathan L Strutt; Jonathan C Barnes; Anna M Butterfield; Edward J Dale; Kim K Baldridge; J Fraser Stoddart; Jay S Siegel
Journal:  Nat Chem       Date:  2014-01-26       Impact factor: 24.427

Review 9.  Fundamental challenges in mechanistic enzymology: progress toward understanding the rate enhancements of enzymes.

Authors:  Daniel Herschlag; Aditya Natarajan
Journal:  Biochemistry       Date:  2013-03-14       Impact factor: 3.162

10.  Conformational isomerism can limit antibody catalysis.

Authors:  Erik W Debler; Roger Müller; Donald Hilvert; Ian A Wilson
Journal:  J Biol Chem       Date:  2008-04-16       Impact factor: 5.157

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