Literature DB >> 7757012

Protein destabilization by electrostatic repulsions in the two-stranded alpha-helical coiled-coil/leucine zipper.

W D Kohn1, C M Kay, R S Hodges.   

Abstract

The destabilizing effect of electrostatic repulsions on protein stability has been studied by using synthetic two-stranded alpha-helical coiled-coils as a model system. The native coiled-coil consists of two identical 35-residue polypeptide chains with a heptad repeat QgVaGbAcLdQeKf and a Cys residue at position 2 to allow formation of an interchain disulfide bridge. This peptide, designed to contain no intrahelical or interhelical electrostatic interactions, forms a stable coiled-coil structure at 20 degrees C in benign medium (50 mM KCl, 25 mM PO4, pH 7) with a [urea]1/2 value of 6.1 M. Four mutant coiled-coils were designed to contain one or two Glu substitutions for Gln per polypeptide chain. The resulting coiled-coils contained potential i to i' + 5 Glu-Glu interchain repulsions (denoted as peptide E2(15,20)), i to i' + 2 Glu-Glu interchain repulsions (denoted E2(20,22)), or no interchain ionic interactions (denoted E2(13,22) and E1(20)). The stabilities of the coiled-coils were determined by measuring the ellipticities at 222 nm as a function of urea or guanidine hydrochloride concentration at 20 degrees C in the presence and absence of an interchain disulfide bridge. At pH 7, in the presence of urea, the stabilities of E2(13,22) and E2(20,22) were identical suggesting that the potential i to i' + 2 interchain Glu-Glu repulsion in the E2(20,22) coiled-coil does not occur. In contrast, the mutant E2(15,20) is substantially less stable than E2(13,22) or E2(15,20) by 0.9 kcal/mol due to the presence of two i to i' + 5 interchain Glu-Glu repulsions, which destabilize the coiled-coil by 0.45 kcal/mol each. At pH 3 the coiled-coils were found to increase in stability as the number of Glu substitutions were increased. This, combined with reversed-phase HPLC results at pH 7 and pH 2, supports the conclusion that the protonated Glu side chains present at low pH are significantly more hydrophobic than Gln side chains which are in turn more hydrophobic than the ionized Glu side chains present at neutral pH. The protonated Glu residues increase the hydrophobicity of the coiled-coil interface leading to higher coiled-coil stability. The guanidine hydrochloride results at pH 7 show similar stabilities between the native and mutant coiled-coils indicating that guanidine hydrochloride masks electrostatic repulsions due to its ionic nature and that Glu and Gln in the e and g positions of the heptad repeat have very similar effects on coiled-coil stability in the presence of GdnHCl.

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Year:  1995        PMID: 7757012      PMCID: PMC2143052          DOI: 10.1002/pro.5560040210

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  55 in total

1.  Charge repulsion in the conformational stability of melittin.

Authors:  Y Hagihara; M Kataoka; S Aimoto; Y Goto
Journal:  Biochemistry       Date:  1992-12-01       Impact factor: 3.162

2.  The two-stranded alpha-helical coiled-coil is an ideal model for studying protein stability and subunit interactions.

Authors:  N E Zhou; B Y Zhu; C M Kay; R S Hodges
Journal:  Biopolymers       Date:  1992-04       Impact factor: 2.505

3.  Tropomyosin coiled-coil interactions: evidence for an unstaggered structure.

Authors:  A D McLachlan; M Stewart
Journal:  J Mol Biol       Date:  1975-10-25       Impact factor: 5.469

4.  Strength and co-operativity of contributions of surface salt bridges to protein stability.

Authors:  A Horovitz; L Serrano; B Avron; M Bycroft; A R Fersht
Journal:  J Mol Biol       Date:  1990-12-20       Impact factor: 5.469

5.  Genetic and structural analysis of the protein stability problem.

Authors:  B W Matthews
Journal:  Biochemistry       Date:  1987-11-03       Impact factor: 3.162

6.  Packing and hydrophobicity effects on protein folding and stability: effects of beta-branched amino acids, valine and isoleucine, on the formation and stability of two-stranded alpha-helical coiled coils/leucine zippers.

Authors:  B Y Zhu; N E Zhou; C M Kay; R S Hodges
Journal:  Protein Sci       Date:  1993-03       Impact factor: 6.725

7.  Controlled formation of model homo- and heterodimer coiled coil polypeptides.

Authors:  T J Graddis; D G Myszka; I M Chaiken
Journal:  Biochemistry       Date:  1993-11-30       Impact factor: 3.162

8.  Contributions of engineered surface salt bridges to the stability of T4 lysozyme determined by directed mutagenesis.

Authors:  D P Sun; U Sauer; H Nicholson; B W Matthews
Journal:  Biochemistry       Date:  1991-07-23       Impact factor: 3.162

9.  Mechanism of specificity in the Fos-Jun oncoprotein heterodimer.

Authors:  E K O'Shea; R Rutkowski; P S Kim
Journal:  Cell       Date:  1992-02-21       Impact factor: 41.582

10.  Energetic contribution of solvent-exposed ion pairs to alpha-helix structure.

Authors:  P C Lyu; P J Gans; N R Kallenbach
Journal:  J Mol Biol       Date:  1992-01-05       Impact factor: 5.469

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  24 in total

1.  The role of position a in determining the stability and oligomerization state of alpha-helical coiled coils: 20 amino acid stability coefficients in the hydrophobic core of proteins.

Authors:  K Wagschal; B Tripet; P Lavigne; C Mant; R S Hodges
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

2.  Nonpolar contributions to conformational specificity in assemblies of designed short helical peptides.

Authors:  C L Boon; A Chakrabartty
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

3.  Design of a minimal protein oligomerization domain by a structural approach.

Authors:  P Burkhard; M Meier; A Lustig
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

4.  Unique oligomeric intermediates of bovine liver catalase.

Authors:  Koodathingal Prakash; Shashi Prajapati; Atta Ahmad; S K Jain; Vinod Bhakuni
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

5.  Soft metal ions, Cd(II) and Hg(II), induce triple-stranded alpha-helical assembly and folding of a de novo designed peptide in their trigonal geometries.

Authors:  X Li; K Suzuki; K Kanaori; K Tajima; A Kashiwada; H Hiroaki; D Kohda; T Tanaka
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

6.  Unique stabilizing interactions identified in the two-stranded alpha-helical coiled-coil: crystal structure of a cortexillin I/GCN4 hybrid coiled-coil peptide.

Authors:  Darin L Lee; Sergei Ivaninskii; Peter Burkhard; Robert S Hodges
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

7.  Stability and specificity of heterodimer formation for the coiled-coil neck regions of the motor proteins Kif3A and Kif3B: the role of unstructured oppositely charged regions.

Authors:  M S Chana; B P Tripet; C T Mant; R Hodges
Journal:  J Pept Res       Date:  2005-02

8.  Coiled-coil response to mechanical force: global stability and local cracking.

Authors:  Steven M Kreuzer; Ron Elber
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

9.  Oligomerization properties of GCN4 leucine zipper e and g position mutants.

Authors:  X Zeng; H Zhu; H A Lashuel; J C Hu
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

10.  Cation selective promotion of tubulin polymerization by alkali metal chlorides.

Authors:  J Wolff; D L Sackett; L Knipling
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

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