Literature DB >> 7757001

The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequences.

N V Grishin1, M A Phillips.   

Abstract

It is well established that, within families of homologous enzymes, amino acid residues that are involved in the chemistry of the reaction are highly conserved. To determine if residues at the subunit interface of oligomeric enzymes with shared active sites are also conserved, comparative analysis of five enzyme families was undertaken. For the chosen enzyme families, sequence data were available for a large number of proteins and a three-dimensional structure was known for at least two members of each family. The analysis indicates that the subunit interface and the hydrophobic core of proteins from all five families have diverged to a similar extent to the overall protein sequences.

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Year:  1994        PMID: 7757001      PMCID: PMC2142754          DOI: 10.1002/pro.5560031231

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  23 in total

1.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

2.  Structure determination of the glycosomal triosephosphate isomerase from Trypanosoma brucei brucei at 2.4 A resolution.

Authors:  R K Wierenga; K H Kalk; W G Hol
Journal:  J Mol Biol       Date:  1987-11-05       Impact factor: 5.469

3.  Refined structure of glutathione reductase at 1.54 A resolution.

Authors:  P A Karplus; G E Schulz
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

4.  Structural asymmetry in the CTP-liganded form of aspartate carbamoyltransferase from Escherichia coli.

Authors:  K H Kim; Z X Pan; R B Honzatko; H M Ke; W N Lipscomb
Journal:  J Mol Biol       Date:  1987-08-20       Impact factor: 5.469

5.  Structure of unligated aspartate carbamoyltransferase of Escherichia coli at 2.6-A resolution.

Authors:  H M Ke; R B Honzatko; W N Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  1984-07       Impact factor: 11.205

6.  Crystal and molecular structures of native and CTP-liganded aspartate carbamoyltransferase from Escherichia coli.

Authors:  R B Honzatko; J L Crawford; H L Monaco; J E Ladner; B F Ewards; D R Evans; S G Warren; D C Wiley; R C Ladner; W N Lipscomb
Journal:  J Mol Biol       Date:  1982-09-15       Impact factor: 5.469

7.  The catalytic mechanism of glutathione reductase as derived from x-ray diffraction analyses of reaction intermediates.

Authors:  E F Pai; G E Schulz
Journal:  J Biol Chem       Date:  1983-02-10       Impact factor: 5.157

8.  Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure.

Authors:  J F Kirsch; G Eichele; G C Ford; M G Vincent; J N Jansonius; H Gehring; P Christen
Journal:  J Mol Biol       Date:  1984-04-15       Impact factor: 5.469

9.  Structure at 2.9-A resolution of aspartate carbamoyltransferase complexed with the bisubstrate analogue N-(phosphonacetyl)-L-aspartate.

Authors:  K L Krause; K W Volz; W N Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  The relation between the divergence of sequence and structure in proteins.

Authors:  C Chothia; A M Lesk
Journal:  EMBO J       Date:  1986-04       Impact factor: 11.598

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  25 in total

1.  Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

Authors:  Daniel R Caffrey; Shyamal Somaroo; Jason D Hughes; Julian Mintseris; Enoch S Huang
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

2.  Localization of protein-binding sites within families of proteins.

Authors:  Dmitry Korkin; Fred P Davis; Andrej Sali
Journal:  Protein Sci       Date:  2005-08-04       Impact factor: 6.725

3.  Structure, function, and evolution of transient and obligate protein-protein interactions.

Authors:  Julian Mintseris; Zhiping Weng
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

4.  X-ray structure of Paramecium bursaria Chlorella virus arginine decarboxylase: insight into the structural basis for substrate specificity.

Authors:  Rahul Shah; Radha Akella; Elizabeth J Goldsmith; Margaret A Phillips
Journal:  Biochemistry       Date:  2007-02-17       Impact factor: 3.162

5.  The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis.

Authors:  Nelson Gil; Andras Fiser
Journal:  Bioinformatics       Date:  2019-01-01       Impact factor: 6.937

6.  Trypanosomatid Deoxyhypusine Synthase Activity Is Dependent on Shared Active-Site Complementation between Pseudoenzyme Paralogs.

Authors:  Gustavo A Afanador; Diana R Tomchick; Margaret A Phillips
Journal:  Structure       Date:  2018-09-06       Impact factor: 5.006

7.  A method to predict residues conferring functional differences between related proteins: application to MAP kinase pathways.

Authors:  D R Caffrey; L A O'Neill; D C Shields
Journal:  Protein Sci       Date:  2000-04       Impact factor: 6.725

8.  Catalysis by a de novo zinc-mediated protein interface: implications for natural enzyme evolution and rational enzyme engineering.

Authors:  Bryan S Der; David R Edwards; Brian Kuhlman
Journal:  Biochemistry       Date:  2012-04-24       Impact factor: 3.162

9.  Beauty is in the eye of the beholder: proteins can recognize binding sites of homologous proteins in more than one way.

Authors:  Juliette Martin
Journal:  PLoS Comput Biol       Date:  2010-06-17       Impact factor: 4.475

10.  A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.

Authors:  Julie Baussand; Alessandra Carbone
Journal:  PLoS Comput Biol       Date:  2009-09-04       Impact factor: 4.475

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