Literature DB >> 7749916

Are buried salt bridges important for protein stability and conformational specificity?

C D Waldburger1, J F Schildbach, R T Sauer.   

Abstract

The side chains of Arg 31, Glu 36 and Arg 40 in Arc repressor form a buried salt-bridge triad. The entire salt-bridge network can be replaced by hydrophobic residues in combinatorial randomization experiments resulting in active mutants that are significantly more stable than wild type. The crystal structure of one mutant reveals that the mutant side chains pack against each other in an otherwise wild-type fold. Thus, simple hydrophobic interactions provide more stabilizing energy than the buried salt bridge and confer comparable conformational specificity.

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Year:  1995        PMID: 7749916     DOI: 10.1038/nsb0295-122

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  86 in total

1.  Structural relationship of kappa-type light chains with AL amyloidosis: multiple deletions found in a VkappaIV protein.

Authors:  M A Alim; S Yamaki; M S Hossain; K Takeda; M Kozima; T Izumi; I Takashi; T Shinoda
Journal:  Clin Exp Immunol       Date:  1999-12       Impact factor: 4.330

2.  Optimization of binding electrostatics: charge complementarity in the barnase-barstar protein complex.

Authors:  L P Lee; B Tidor
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

3.  Role of Lys335 in the metastability and function of inhibitory serpins.

Authors:  H Im; M H Yu
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

4.  Electrostatic interactions in the GCN4 leucine zipper: substantial contributions arise from intramolecular interactions enhanced on binding.

Authors:  Z S Hendsch; B Tidor
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

5.  Contributions of distinct quaternary contacts to cooperative operator binding by Mnt repressor.

Authors:  A Berggrun; R T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

6.  Molecular dynamics simulations on the first two helices of Vpu from HIV-1.

Authors:  I Sramala; V Lemaitre; J D Faraldo-Gómez; S Vincent; A Watts; W B Fischer
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

7.  On hydrophobicity and conformational specificity in proteins.

Authors:  Erik Sandelin
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

8.  Adhesive-cohesive model for protein compressibility: an alternative perspective on stability.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-24       Impact factor: 11.205

9.  An integrated structural and computational study of the thermostability of two thioredoxin mutants from Alicyclobacillus acidocaldarius.

Authors:  Simonetta Bartolucci; Giuseppina De Simone; Stefania Galdiero; Roberto Improta; Valeria Menchise; Carlo Pedone; Emilia Pedone; Michele Saviano
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

10.  Side chain dynamics of carboxyl and carbonyl groups in the catalytic function of Escherichia coli ribonuclease H.

Authors:  Kate A Stafford; Fabien Ferrage; Jae-Hyun Cho; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2013-11-20       Impact factor: 15.419

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