Literature DB >> 7703857

A "parallel plate" electrostatic model for bimolecular rate constants applied to electron transfer proteins.

J A Watkins1, M A Cusanovich, T E Meyer, G Tollin.   

Abstract

A "parallel plate" model describing the electrostatic potential energy of protein-protein interactions is presented that provides an analytical representation of the effect of ionic strength on a biomolecular rate constant. The model takes into account the asymmetric distribution of charge on the surface of the protein and localized charges at the site of electron transfer that are modeled as elements of a parallel plate condenser. Both monopolar and dipolar interactions are included. Examples of simple (monophasic) and complex (biphasic) ionic strength dependencies obtained from experiments with several electron transfer protein systems are presented, all of which can be accommodated by the model. The simple cases do not require the use of both monopolar and dipolar terms (i.e., they can be fit well by either alone). The biphasic dependencies can be fit only by using dipolar and monopolar terms of opposite sign, which is physically unreasonable for the molecules considered. Alternatively, the high ionic strength portion of the complex dependencies can be fit using either the monopolar term alone or the complete equation; this assumes a model in which such behavior is a consequence of electron transfer mechanisms involving changes in orientation or site of reaction as the ionic strength is varied. Based on these analyses, we conclude that the principal applications of the model presented here are to provide information about the structural properties of intermediate electron transfer complexes and to quantify comparisons between related proteins or site-specific mutants. We also conclude that the relative contributions of monopolar and dipolar effects to protein electron transfer kinetics cannot be evaluated from experimental data by present approximations.

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Year:  1994        PMID: 7703857      PMCID: PMC2142629          DOI: 10.1002/pro.5560031124

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  37 in total

1.  An hypothetical structure for an intermolecular electron transfer complex of cytochromes c and b5.

Authors:  F R Salemme
Journal:  J Mol Biol       Date:  1976-04-15       Impact factor: 5.469

2.  The ionic strength dependence of the rate of a reaction between a small ion and a large ion with a dipole moment.

Authors:  J W van Leeuwen; F J Mofers; E C Veerman
Journal:  Biochim Biophys Acta       Date:  1981-04-13

3.  Experimental evaluation of the effective dielectric constant of proteins.

Authors:  D C Rees
Journal:  J Mol Biol       Date:  1980-08-15       Impact factor: 5.469

4.  Electrostatic orientation during electron transfer between flavodoxin and cytochrome c.

Authors:  J B Matthew; P C Weber; F R Salemme; F M Richards
Journal:  Nature       Date:  1983-01-13       Impact factor: 49.962

5.  Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints.

Authors:  D Shoup; G Lipari; A Szabo
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

6.  Molecular interpretation of kinetic-ionic strength effects.

Authors:  B A Feinberg; M D Ryan
Journal:  J Inorg Biochem       Date:  1981-11       Impact factor: 4.155

7.  Role of diffusion in ligand binding to macromolecules and cell-bound receptors.

Authors:  D Shoup; A Szabo
Journal:  Biophys J       Date:  1982-10       Impact factor: 4.033

8.  Structural prototypes for an extended family of flavoprotein reductases: comparison of phthalate dioxygenase reductase with ferredoxin reductase and ferredoxin.

Authors:  C C Correll; M L Ludwig; C M Bruns; P A Karplus
Journal:  Protein Sci       Date:  1993-12       Impact factor: 6.725

9.  Transient kinetics of electron transfer reactions of flavodoxin: ionic strength dependence of semiquinone oxidation by cytochrome c, ferricyanide, and ferric ethylenediaminetetraacetic acid and computer modeling of reaction complexes.

Authors:  R P Simondsen; P C Weber; F R Salemme; G Tollin
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

10.  Metalloprotein electron transfer reactions: analysis of reactivity of horse heart cytochrome c with inorganic complexes.

Authors:  S Wherland; H B Gray
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

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  11 in total

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Authors:  Francisco M Reyes-Sosa; Jorge Gil-Martínez; Fernando P Molina-Heredia
Journal:  Photosynth Res       Date:  2011-10-09       Impact factor: 3.573

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Authors:  J A Navarro; M Hervás; J Sun; B De la Cerda; P R Chitnis; M A De la Rosa
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3.  A comparative structural and functional analysis of cyanobacterial plastocyanin and cytochrome c (6) as alternative electron donors to Photosystem I.

Authors:  Antonio Díaz-Quintana; José A Navarro; Manuel Hervás; Fernando P Molina-Heredia; Berta De la Cerda; Miguel A De la Rosa
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.573

4.  A comparative study of the thermal stability of plastocyanin, cytochrome c(6) and Photosystem I in thermophilic and mesophilic cyanobacteria.

Authors:  A Balme; M Hervás; L A Campos; J Sancho; M A De la Rosa; J A Navarro
Journal:  Photosynth Res       Date:  2001       Impact factor: 3.573

5.  Cyanobacterial Photosystem I lacks specificity in its interaction with cytochrome c(6) electron donors.

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Journal:  Photosynth Res       Date:  2005       Impact factor: 3.573

6.  Kinetics of photo-induced electron transfer from high-potential iron-sulfur protein to the photosynthetic reaction center of the purple phototroph Rhodoferax fermentans.

Authors:  A Hochkoeppler; D Zannoni; S Ciurli; T E Meyer; M A Cusanovich; G Tollin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

7.  Electrostatic properties of cytochrome f: implications for docking with plastocyanin.

Authors:  D C Pearson; E L Gross; E S David
Journal:  Biophys J       Date:  1996-07       Impact factor: 4.033

8.  Mutations in both leucine 12 and lysine 33 in plastocyanin from Synechocystis sp. PCC 6803 induce drastic changes in the hydrophobic interactions with Photosystem I.

Authors:  Antonio Díaz-Quintana; Berta De la Cerda; Manuel Hervás; José A Navarro; Miguel A De la Rosa
Journal:  Photosynth Res       Date:  2002       Impact factor: 3.573

9.  A docked state conformational dynamics model to explain the ionic strength dependence of FMN - heme electron transfer in nitric oxide synthase.

Authors:  Andrei V Astashkin; Jinghui Li; Huayu Zheng; Yubin Miao; Changjian Feng
Journal:  J Inorg Biochem       Date:  2018-03-26       Impact factor: 4.155

10.  The Charge Distribution on a Protein Surface Determines Whether Productive or Futile Encounter Complexes Are Formed.

Authors:  Antonella Di Savino; Johannes M Foerster; G Matthias Ullmann; Marcellus Ubbink
Journal:  Biochemistry       Date:  2021-03-01       Impact factor: 3.162

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