Literature DB >> 7696517

Electrostatics of hemoglobins from measurements of the electric dichroism and computer simulations.

J Antosiewicz1, D Porschke.   

Abstract

Hemoglobins from normal human cells, from sickle cells, and from horse were investigated by electrooptical methods in their oxy and deoxy forms. The reduced linear dichroism measured as a function of the electric field strength demonstrates the existence of permanent dipole moments in the range of 250-400 Debye units. The reduced limiting dichroism is relatively small (< or = 0.1); it is negative for hemoglobin from sickle cells and positive for the hemoglobins from normal human cells and from horse. The dichroism decay time constants are in the range from about 55 to 90 ns. Calculations of the electrooptical data from available crystal structures are given according to models of various complexity, including Monte Carlo simulations of proton fluctuations with energies evaluated by a finite difference Poisson-Boltzmann procedure. The experimental dipole moments are shown to be consistent with the results of the calculations. In the case of human deoxyhemoglobin, the root mean square dipole is higher than the mean dipole by a factor of about 4.5, indicating a particularly large relative contribution due to proton fluctuations. The ratio of the root mean square dipole to the mean dipole is much smaller (approximately 1.1 to approximately 1.5) for the other hemoglobin molecules. The calculations demonstrate that the dichroism decay time constants are not simply determined by the size/shape of the proteins, but are strongly influenced by the orientation of the dipole vector with respect to the axis of maximal absorbance. The comparison of experimental and calculated electrooptical data provides a useful test for the accuracy of electrostatic calculations and/or for the equivalence of structures in crystals and in solutions.

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Year:  1995        PMID: 7696517      PMCID: PMC1281729          DOI: 10.1016/S0006-3495(95)80226-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  33 in total

1.  Electric, optical and hydrodynamic parameters of lac repressor from measurements of the electric dichroism. High permanent dipole moment associated with the protein.

Authors:  D Pörschke
Journal:  Biophys Chem       Date:  1987-11       Impact factor: 2.352

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Authors:  D J Barlow; J M Thornton
Journal:  Biopolymers       Date:  1986-09       Impact factor: 2.505

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Authors:  W H Orttung
Journal:  J Phys Chem       Date:  1968-11

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Authors:  P Schlecht; H Vogel; A Mayer
Journal:  Biopolymers       Date:  1968       Impact factor: 2.505

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Authors:  W H Orttung
Journal:  Biochemistry       Date:  1970-06-09       Impact factor: 3.162

6.  Three dimensional fourier synthesis of horse deoxyhaemoglobin at 2.8 Angstrom units resolution.

Authors:  W Bolton; M F Perutz
Journal:  Nature       Date:  1970-11-07       Impact factor: 49.962

7.  Calculation of the mean-square dipole moment and proton fluctuation anisotropy of hemoglobin at low ionic strength.

Authors:  W H Orttung
Journal:  J Phys Chem       Date:  1969-02

8.  Dielectric properties of hemoglobin and myoglobin. I. Influence of solvent and particle size on the dielectric dispersion.

Authors:  P Schlecht; A Mayer; G Hettner; H Vogel
Journal:  Biopolymers       Date:  1969-06       Impact factor: 2.505

9.  Refined crystal structure of deoxyhemoglobin S. I. Restrained least-squares refinement at 3.0-A resolution.

Authors:  E A Padlan; W E Love
Journal:  J Biol Chem       Date:  1985-07-15       Impact factor: 5.157

Review 10.  Hydrodynamic properties of complex, rigid, biological macromolecules: theory and applications.

Authors:  J G Garcia de la Torre; V A Bloomfield
Journal:  Q Rev Biophys       Date:  1981-02       Impact factor: 5.318

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  7 in total

1.  Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

Authors:  J García De La Torre; M L Huertas; B Carrasco
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  Metastable mesoscopic clusters in solutions of sickle-cell hemoglobin.

Authors:  Weichun Pan; Oleg Galkin; Luis Filobelo; Ronald L Nagel; Peter G Vekilov
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

3.  Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models.

Authors:  A Ortega; D Amorós; J García de la Torre
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

4.  Electrostatics and electrodynamics of bacteriorhodopsin.

Authors:  D Porschke
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

5.  Computation of the dipole moments of proteins.

Authors:  J Antosiewicz
Journal:  Biophys J       Date:  1995-10       Impact factor: 4.033

6.  PHEMTO: protein pH-dependent electric moment tools.

Authors:  Alexander A Kantardjiev; Boris P Atanasov
Journal:  Nucleic Acids Res       Date:  2009-05-06       Impact factor: 16.971

7.  A server and database for dipole moments of proteins.

Authors:  Clifford E Felder; Jaime Prilusky; Israel Silman; Joel L Sussman
Journal:  Nucleic Acids Res       Date:  2007-05-25       Impact factor: 16.971

  7 in total

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