Literature DB >> 7694671

Strategies for the computation of infrared CD and absorption spectra of biological molecules: ribonucleic acids.

T Xiang1, D J Goss, M Diem.   

Abstract

We report observed and computed infrared (vibrational) circular dichroism spectra of a number of polyribonucleic acids in aqueous solutions in the 1600-1750 cm-1 spectral region, in which C = O and some nucleotide base ring stretching vibrations occur. The experimental data are compared with results calculated using different levels of sophistication within the exciton approach. We find that observed band shapes are generally well reproduced by these models, particularly if care is taken to determine the direction of the vibrational dipole transition moments accurately.

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Year:  1993        PMID: 7694671      PMCID: PMC1225845          DOI: 10.1016/S0006-3495(93)81175-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  6 in total

1.  Structure of the single-stranded polyribonucleotide polycytidylic acid.

Authors:  S Arnott; R Chandrasekaran; A G Leslie
Journal:  J Mol Biol       Date:  1976-09-25       Impact factor: 5.469

2.  The rotatory properties of molecules containing two peptide groups: theory.

Authors:  P M Bayley; E B Nielsen; J A Schellman
Journal:  J Phys Chem       Date:  1969-01

3.  DNA solution conformation via infrared circular dichroism: experimental and theoretical results for B-family polymers.

Authors:  W X Zhong; M Gulotta; D J Goss; M Diem
Journal:  Biochemistry       Date:  1990-08-14       Impact factor: 3.162

4.  IR vibrational CD in model deoxyoligonucleotides: observation of the B----Z phase transition and extended coupled oscillator intensity calculations.

Authors:  M Gulotta; D J Goss; M Diem
Journal:  Biopolymers       Date:  1989-12       Impact factor: 2.505

5.  Structures for polyinosinic acid and polyguanylic acid.

Authors:  S Arnott; R Chandrasekaran; C M Marttila
Journal:  Biochem J       Date:  1974-08       Impact factor: 3.857

6.  Vibrational circular dichroism studies of the A-to-B conformational transition in DNA.

Authors:  L Wang; T A Keiderling
Journal:  Biochemistry       Date:  1992-10-27       Impact factor: 3.162

  6 in total
  5 in total

1.  Mie-type scattering and non-Beer-Lambert absorption behavior of human cells in infrared microspectroscopy.

Authors:  Brian Mohlenhoff; Melissa Romeo; Max Diem; Bayden R Wood
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

2.  Nucleic acid vibrational circular dichroism, absorption, and linear dichroism spectra. II. A DeVoe theory approach.

Authors:  B D Self; D S Moore
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

3.  Nucleic acid vibrational circular dichroism, absorption, and linear dichroism spectra. I. A DeVoe theory approach.

Authors:  B D Self; D S Moore
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

4.  Conformational studies of the smallest structural motifs of DNA detectable via vibrational circular dichroism: cytidylyl-(3'-5')-guanosine and guanylyl-(3'-5')-cytidine.

Authors:  S S Birke; M Diem
Journal:  Biophys J       Date:  1995-03       Impact factor: 4.033

5.  The nuclear magnetic resonance of CCCC RNA reveals a right-handed helix, and revised parameters for AMBER force field torsions improve structural predictions from molecular dynamics.

Authors:  Jason D Tubbs; David E Condon; Scott D Kennedy; Melanie Hauser; Philip C Bevilacqua; Douglas H Turner
Journal:  Biochemistry       Date:  2013-01-29       Impact factor: 3.162

  5 in total

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