Literature DB >> 4375981

Structures for polyinosinic acid and polyguanylic acid.

S Arnott, R Chandrasekaran, C M Marttila.   

Abstract

X-ray-diffraction analysis of oriented, partially crystalline fibres of polyinosinic acid has resulted in a new molecular model. This model consists of four identical polynucleotide chains related to one another by a fourfold rotation axis. The coaxial helices are righthanded (screw symmetry 23(2)) and have an axial translation per residue h=0.341nm and a rotation per residue t=31.3 degrees . Incorporated in the model are standard bond lengths, bond angles and C-2-endo furanose rings. The nucleotide conformation angles, determined by linked-atom least-squares methods, are orthodox and the fit with the X-ray intensities is good. Each hypoxanthine base is linked to two others by hydrogen bonds involving O-6 and N-1. Further stability may arise from intrachain hydrogen bonds between each ribose hydroxyl group and the phosphate oxygen O-3. If guanine were to be substituted for hypoxanthine in an isogeometrical molecular structure, additional hydrogen bonds could be made between every N-2 and N-7.

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Year:  1974        PMID: 4375981      PMCID: PMC1168108          DOI: 10.1042/bj1410537

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  13 in total

1.  Physical and enzymatic studies on poly d(I-C)-poly d(I-C), an unusual double-helical DNA.

Authors:  Y Mitsui; R Langridge; B E Shortle; C R Cantor; R C Grant; M Kodama; R D Wells
Journal:  Nature       Date:  1970-12-19       Impact factor: 49.962

2.  Nucleoside conformations. X. An X-ray fiber diffraction study of the gels of guanine nucleosides.

Authors:  P Tougard; J F Chantot; W Guschlbauer
Journal:  Biochim Biophys Acta       Date:  1973-04-21

3.  Triple-stranded polynucleotide helix containing only purine bases.

Authors:  S Arnott; P J Bond
Journal:  Science       Date:  1973-07-06       Impact factor: 47.728

Review 4.  The crystal structures of purines, pyrimidines and their intermolecular complexes.

Authors:  D Voet; A Rich
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1970

Review 5.  The geometry of nucleic acids.

Authors:  S Arnott
Journal:  Prog Biophys Mol Biol       Date:  1970       Impact factor: 3.667

6.  Refinement of the structure of B-DNA and implications for the analysis of x-ray diffraction data from fibers of biopolymers.

Authors:  S Arnott; D W Hukins
Journal:  J Mol Biol       Date:  1973-12-05       Impact factor: 5.469

7.  Structures of synthetic polynucleotides in the A-RNA and A'-RNA conformations: x-ray diffraction analyses of the molecular conformations of polyadenylic acid--polyuridylic acid and polyinosinic acid--polycytidylic acid.

Authors:  S Arnott; D W Hukins; S D Dover; W Fuller; A R Hodgson
Journal:  J Mol Biol       Date:  1973-12-05       Impact factor: 5.469

8.  Molecular and crystal structures of double-helical RNA. I. An x-ray diffraction study of fragmented yeast RNA and a preliminary double-helical RNA model.

Authors:  W Fuller; F Hutchinson; M Spencer; M H Wilkins
Journal:  J Mol Biol       Date:  1967-08-14       Impact factor: 5.469

9.  X-ray diffraction studies of double helical ribonucleic acid.

Authors:  S Arnott; F Hutchinson; M Spencer; M H Wilkins; W Fuller; R Langridge
Journal:  Nature       Date:  1966-07-16       Impact factor: 49.962

10.  The dimensions and shapes of the furanose rings in nucleic acids.

Authors:  S Arnott; D W Hukins
Journal:  Biochem J       Date:  1972-11       Impact factor: 3.857

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  47 in total

1.  The stability of polypurine tetraplexes in the presence of mono- and divalent cations.

Authors:  J S Lee
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

2.  Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T).

Authors:  R Jin; B L Gaffney; C Wang; R A Jones; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

3.  Hairpin and parallel quartet structures for telomeric sequences.

Authors:  P Balagurumoorthy; S K Brahmachari; D Mohanty; M Bansal; V Sasisekharan
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

4.  Scavenger receptors mediate cellular uptake of polyvalent oligonucleotide-functionalized gold nanoparticles.

Authors:  Pinal C Patel; David A Giljohann; Weston L Daniel; Dan Zheng; Andrew E Prigodich; Chad A Mirkin
Journal:  Bioconjug Chem       Date:  2010-11-11       Impact factor: 4.774

5.  Circular dichroism calculations for polyinosinic acid in proposed multi-stranded geometries.

Authors:  C L Cech; I Tinoco
Journal:  Nucleic Acids Res       Date:  1976-02       Impact factor: 16.971

6.  Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism.

Authors:  R Marquet; F Baudin; C Gabus; J L Darlix; M Mougel; C Ehresmann; B Ehresmann
Journal:  Nucleic Acids Res       Date:  1991-05-11       Impact factor: 16.971

7.  Characterization by 1H NMR of glycosidic conformations in the tetramolecular complex formed by d(GGTTTTTGG).

Authors:  Y Wang; R Jin; B Gaffney; R A Jones; K J Breslauer
Journal:  Nucleic Acids Res       Date:  1991-09-11       Impact factor: 16.971

8.  G-DNA: a twice-folded DNA structure adopted by single-stranded oligo(dG) and its implications for telomeres.

Authors:  I G Panyutin; O I Kovalsky; E I Budowsky; R E Dickerson; M E Rikhirev; A A Lipanov
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

9.  Effect of competing self-structure on triplex formation with purine-rich oligodeoxynucleotides containing GA repeats.

Authors:  S B Noonberg; J C François; T Garestier; C Hélène
Journal:  Nucleic Acids Res       Date:  1995-06-11       Impact factor: 16.971

10.  Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover.

Authors:  D Mohanty; M Bansal
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

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