Literature DB >> 7688142

Ribozymes: a distinct class of metalloenzymes.

A M Pyle1.   

Abstract

Ribozymes are an important new class of metalloenzymes that have an unlikely feature: they are made entirely of ribonucleic acid (RNA). Metal ions are essential for efficient chemical catalysis by ribozymes and are often required for the stabilization of ribozyme structure. Most ribozymes catalyze reactions at phosphorus centers through one of two major mechanistic pathways, and reaction has been observed at carbon centers. Creative experiments have revealed the position of metal ions in the active site of two ribozymes. The exploitation of variable metal geometry and reactivity has expanded ribozyme chemistry and has facilitated the application of in vitro selection for the creation of novel ribozymes.

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Year:  1993        PMID: 7688142     DOI: 10.1126/science.7688142

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  93 in total

1.  Ribozyme cleavage of a 2,5-phosphodiester linkage: mechanism and a restricted divalent metal-ion requirement.

Authors:  I H Shih; M D Been
Journal:  RNA       Date:  1999-09       Impact factor: 4.942

2.  Relationship between internucleotide linkage geometry and the stability of RNA.

Authors:  G A Soukup; R R Breaker
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

Review 3.  The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.

Authors:  G Varani; W H McClain
Journal:  EMBO Rep       Date:  2000-07       Impact factor: 8.807

Review 4.  Recent advances in the elucidation of the mechanisms of action of ribozymes.

Authors:  Y Takagi; M Warashina; W J Stec; K Yoshinari; K Taira
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

5.  Significantly higher activity of a cytoplasmic hammerhead ribozyme than a corresponding nuclear counterpart: engineered tRNAs with an extended 3' end can be exported efficiently and specifically to the cytoplasm in mammalian cells.

Authors:  T Kuwabara; M Warashina; S Koseki; M Sano; J Ohkawa; K Nakayama; K Taira
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

6.  Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation.

Authors:  C Burkhardt; M Zacharias
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

7.  Existence of efficient divalent metal ion-catalyzed and inefficient divalent metal ion-independent channels in reactions catalyzed by a hammerhead ribozyme.

Authors:  Jing-Min Zhou; De-Min Zhou; Yasuomi Takagi; Yasuhiro Kasai; Atsushi Inoue; Tadashi Baba; Kazunari Taira
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

8.  Effects of magnesium ions on the stabilization of RNA oligomers of defined structures.

Authors:  Martin J Serra; John D Baird; Taraka Dale; Bridget L Fey; Kimberly Retatagos; Eric Westhof
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

9.  Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics.

Authors:  J Pan; D Thirumalai; S A Woodson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

10.  A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency.

Authors:  D A Samarsky; G Ferbeyre; E Bertrand; R H Singer; R Cedergren; M J Fournier
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

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