Literature DB >> 7686069

Crevice-forming mutants of bovine pancreatic trypsin inhibitor: stability changes and new hydrophobic surface.

K S Kim1, F Tao, J Fuchs, A T Danishefsky, D Housset, A Wlodawer, C Woodward.   

Abstract

Four mutants of bovine pancreatic trypsin inhibitor (BPTI) with replacements in the rigid core result in the creation of deep crevices on the surface of the protein. Other than crevices at the site of the mutation, few other differences are observed in the crystal structures of wild-type BPTI and the mutants F22A, Y23A, N43G, and F45A. These mutants are highly destabilized relative to wild type (WT). The differences between WT and mutants in the free energy change associated with cooperative folding/unfolding, delta delta G0 (WT-->mut), have been measured by calorimetry, and they are in good agreement with delta delta G0(WT-->mut) values from hydrogen exchange rates. For F22A the change in free energy difference is about 1.7 kcal/mol at 25 degrees C; for the other three mutants it is in the range of 5-7 kcal/mol at 25 degrees C. The experimental delta delta G0(WT-->mut) values of F22A, Y23A, and F45A are reasonably well accounted for as the sum of two terms: the difference in transfer free energy change, and a contribution from exposure to solvent of new surface (Eriksson, A.E., et al., 1992, Science 255, 178-183), if the recently corrected transfer free energies and surface hydrophobicities (De Young, L. & Dill, K., 1990, J. Phys. Chem. 94, 801-809; Sharp, K.A., et al., 1991a, Science 252, 106-109) are used and only nonpolar surface is taken into account. In N43G, three protein-protein hydrogen bonds are replaced by protein-water hydrogen bonds.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1993        PMID: 7686069      PMCID: PMC2142357          DOI: 10.1002/pro.5560020410

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  29 in total

1.  Effects of hydrated water on protein unfolding.

Authors:  T Ooi; M Oobatake
Journal:  J Biochem       Date:  1988-01       Impact factor: 3.387

2.  Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides.

Authors:  T Ooi; M Oobatake; G Némethy; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

3.  Cold denaturation of myoglobin.

Authors:  P L Privalov; V P Kutyshenko
Journal:  J Mol Biol       Date:  1986-08-05       Impact factor: 5.469

4.  Solvation energy in protein folding and binding.

Authors:  D Eisenberg; A D McLachlan
Journal:  Nature       Date:  1986 Jan 16-22       Impact factor: 49.962

5.  Basic pancreatic trypsin inhibitor has unusual thermodynamic stability parameters.

Authors:  E Moses; H J Hinz
Journal:  J Mol Biol       Date:  1983-11-05       Impact factor: 5.469

Review 6.  Stability of proteins: small globular proteins.

Authors:  P L Privalov
Journal:  Adv Protein Chem       Date:  1979

7.  Characterization of the distribution of internal motions in the basic pancreatic trypsin inhibitor using a large number of internal NMR probes.

Authors:  G Wagner
Journal:  Q Rev Biophys       Date:  1983-02       Impact factor: 5.318

8.  Solvent-accessible surfaces of proteins and nucleic acids.

Authors:  M L Connolly
Journal:  Science       Date:  1983-08-19       Impact factor: 47.728

9.  Hydrogen exchange rates in pancreatic trypsin inhibitor are not correlated to thermal stability in urea.

Authors:  B D Hilton; K Trudeau; C K Woodward
Journal:  Biochemistry       Date:  1981-08-04       Impact factor: 3.162

10.  Structural effects induced by removal of a disulfide-bridge: the X-ray structure of the C30A/C51A mutant of basic pancreatic trypsin inhibitor at 1.6 A.

Authors:  C Eigenbrot; M Randal; A A Kossiakoff
Journal:  Protein Eng       Date:  1990-07
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  9 in total

1.  Heat capacity changes upon burial of polar and nonpolar groups in proteins.

Authors:  V V Loladze; D N Ermolenko; G I Makhatadze
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  Amino-acid substitutions at the fully exposed P1 site of bovine pancreatic trypsin inhibitor affect its stability.

Authors:  D Krowarsch; J Otlewski
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

3.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

Authors:  Andrei L Lomize; Mikhail Y Reibarkh; Irina D Pogozheva
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

4.  Thermodynamics of BPTI folding.

Authors:  G I Makhatadze; K S Kim; C Woodward; P L Privalov
Journal:  Protein Sci       Date:  1993-12       Impact factor: 6.725

5.  Thermodynamics of single peptide bond cleavage in bovine pancreatic trypsin inhibitor (BPTI).

Authors:  Olga Buczek; Daniel Krowarsch; Jacek Otlewski
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

6.  Thermodynamics of unfolding for turkey ovomucoid third domain: thermal and chemical denaturation.

Authors:  L Swint; A D Robertson
Journal:  Protein Sci       Date:  1993-12       Impact factor: 6.725

7.  Crevice-forming mutants in the rigid core of bovine pancreatic trypsin inhibitor: crystal structures of F22A, Y23A, N43G, and F45A.

Authors:  A T Danishefsky; D Housset; K S Kim; F Tao; J Fuchs; C Woodward; A Wlodawer
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

8.  Mutational analysis of the BPTI folding pathway: I. Effects of aromatic-->leucine substitutions on the distribution of folding intermediates.

Authors:  J X Zhang; D P Goldenberg
Journal:  Protein Sci       Date:  1997-07       Impact factor: 6.725

9.  Coevolved Canonical Loops Conformations of Single-Domain Antibodies: A Tale of Three Pockets Playing Musical Chairs.

Authors:  Francis Gaudreault; Christopher R Corbeil; Enrico O Purisima; Traian Sulea
Journal:  Front Immunol       Date:  2022-06-03       Impact factor: 8.786

  9 in total

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