Literature DB >> 7679298

Application of the one- and two-dimensional Ising models to studies of cooperativity between ion channels.

Y Liu1, J P Dilger.   

Abstract

The Ising model of statistical physics provides a framework for studying systems of protomers in which nearest neighbors interact with each other. In this article, the Ising model is applied to the study of cooperative phenomena between ligand-gated ion channels. Expressions for the mean open channel probability, rho o, and the variance, sigma 2, are derived from the grand partition function. In the one-dimensional Ising model, interactions between neighboring open channels give rise to a sigmoidal rho o versus concentration curve and a nonquadratic relationship between sigma 2 and rho o. Positive cooperativity increases the slope at the midpoint of the rho o versus concentration curve, shifts the apparent binding affinity to lower concentrations, and increases the variance for a given rho o. Negative cooperativity has the opposite effects. Strong negative cooperativity results in a bimodal sigma 2 versus rho o curve. The slope of the rho o versus concentration curve increases linearly with the number of binding sites on a protomer, but the sigma 2 versus rho o relationship is independent of the number of ligand binding sites. Thus, the sigma 2 versus rho o curve provides unambiguous information about channel interactions. In the two-dimensional Ising model, rho o and sigma 2 are calculated numerically from a series expansion of the grand partition function appropriate for weak interactions. Virtually all of the features exhibited by the one-dimensional model are qualitatively present in the two-dimensional model. These models are also applicable to voltage-gated ion channels.

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Year:  1993        PMID: 7679298      PMCID: PMC1262299          DOI: 10.1016/S0006-3495(93)81337-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

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Authors:  K Iwasa; G Ehrenstein; N Moran; M Jia
Journal:  Biophys J       Date:  1986-09       Impact factor: 4.033

5.  Activation of acetylcholine receptors on clonal mammalian BC3H-1 cells by low concentrations of agonist.

Authors:  S M Sine; J H Steinbach
Journal:  J Physiol       Date:  1986-04       Impact factor: 5.182

6.  Dependence of acetylcholine receptor channel kinetics on agonist concentration in cultured mouse muscle fibres.

Authors:  M B Jackson
Journal:  J Physiol       Date:  1988-03       Impact factor: 5.182

7.  The relationship between agonist occupation and the permeability response of the cholinergic receptor revealed by bound cobra alpha-toxin.

Authors:  S M Sine; P Taylor
Journal:  J Biol Chem       Date:  1980-11-10       Impact factor: 5.157

8.  Fast events in single-channel currents activated by acetylcholine and its analogues at the frog muscle end-plate.

Authors:  D Colquhoun; B Sakmann
Journal:  J Physiol       Date:  1985-12       Impact factor: 5.182

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Authors:  B Katz; R Miledi
Journal:  J Physiol       Date:  1972-08       Impact factor: 5.182

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Authors:  C R Anderson; C F Stevens
Journal:  J Physiol       Date:  1973-12       Impact factor: 5.182

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  15 in total

1.  Evidence for cooperativity between nicotinic acetylcholine receptors in patch clamp records.

Authors:  A M Keleshian; R O Edeson; G J Liu; B W Madsen
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2.  The Ising model in physics and statistical genetics.

Authors:  J Majewski; H Li; J Ott
Journal:  Am J Hum Genet       Date:  2001-08-20       Impact factor: 11.025

Review 3.  Ligand-gated ion channel currents in a nonstationary lyotropic model.

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Journal:  Neurochem Res       Date:  2003-02       Impact factor: 3.996

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Authors:  Riza Erdem
Journal:  J Biol Phys       Date:  2007-03-15       Impact factor: 1.365

5.  Power spectra and cooperativity of a calcium-regulated cation channel.

Authors:  M W McGeoch; J E McGeoch
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

6.  Description of interacting channel gating using a stochastic Markovian model.

Authors:  K Manivannan; R T Mathias; E Gudowska-Nowak
Journal:  Bull Math Biol       Date:  1996-01       Impact factor: 1.758

7.  Lyotropic ion channel current model compared with ising model.

Authors:  Leif Matsson; Virulh Sa-Yakanit; Santipong Boribarn
Journal:  J Biol Phys       Date:  2005-12       Impact factor: 1.365

8.  Cooperative behavior of K+ channels in the tonoplast of Chara corallina.

Authors:  S Draber; R Schultze; U P Hansen
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

9.  Introduction to the fractality principle of consciousness and the sentyon postulate.

Authors:  Erhard Bieberich
Journal:  Cognit Comput       Date:  2012-03       Impact factor: 5.418

Review 10.  An introduction to critical points for biophysicists; observations of compositional heterogeneity in lipid membranes.

Authors:  Aurelia R Honerkamp-Smith; Sarah L Veatch; Sarah L Keller
Journal:  Biochim Biophys Acta       Date:  2008-10-01
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