Literature DB >> 7638229

Chicken double-stranded RNA adenosine deaminase has apparent specificity for Z-DNA.

A Herbert1, K Lowenhaupt, J Spitzner, A Rich.   

Abstract

A M(r) 140,000 protein has been purified from chicken lungs to apparent homogeneity. The protein binds with high affinity to a non-BNA conformation, which is most likely to the Z-DNA. The protein also has a binding site for double-stranded RNA (dsRNA). Peptide sequences from this protein show similarity to dsRNA adenosine deaminase, an enzyme that deaminates adenosine in dsRNA to form inosine. Assays for this enzyme confirm that dsRNA adenosine deaminase activity and Z-DNA binding are properties of the same molecule. The coupling of these two activities in a single molecule may indicate a distinctive mechanism of gene regulation that is, in part, dependent on DNA topology. As such, DNA topology, through its effects on the efficiency and extent of RNA editing may be important in the generation of new phenotypes during evolution.

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Year:  1995        PMID: 7638229      PMCID: PMC41377          DOI: 10.1073/pnas.92.16.7550

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Antisense RNA injections in fertilized frog eggs reveal an RNA duplex unwinding activity.

Authors:  M R Rebagliati; D A Melton
Journal:  Cell       Date:  1987-02-27       Impact factor: 41.582

2.  A developmentally regulated activity that unwinds RNA duplexes.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1987-02-27       Impact factor: 41.582

3.  Supercoiling of the DNA template during transcription.

Authors:  L F Liu; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

4.  Cell cycle expression of RNA duplex unwindase activity in mammalian cells.

Authors:  R W Wagner; K Nishikura
Journal:  Mol Cell Biol       Date:  1988-02       Impact factor: 4.272

5.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

Review 6.  The chemistry and biology of left-handed Z-DNA.

Authors:  A Rich; A Nordheim; A H Wang
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

7.  Energetics of B-to-Z transition in DNA.

Authors:  L J Peck; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

8.  Bromination stabilizes poly(dG-dC) in the Z-DNA form under low-salt conditions.

Authors:  A Möller; A Nordheim; S A Kozlowski; D J Patel; A Rich
Journal:  Biochemistry       Date:  1984-01-03       Impact factor: 3.162

9.  Left-handed DNA in restriction fragments and a recombinant plasmid.

Authors:  J Kłysik; S M Stirdivant; J E Larson; P A Hart; R D Wells
Journal:  Nature       Date:  1981-04-23       Impact factor: 49.962

10.  A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences.

Authors:  P S Ho; M J Ellison; G J Quigley; A Rich
Journal:  EMBO J       Date:  1986-10       Impact factor: 11.598

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  40 in total

1.  The zalpha domain of the editing enzyme dsRNA adenosine deaminase binds left-handed Z-RNA as well as Z-DNA.

Authors:  B A Brown; K Lowenhaupt; C M Wilbert; E B Hanlon; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  Specific induction of Z-DNA conformation by a nuclear localization signal peptide of lupin glutaminyl tRNA synthetase.

Authors:  A Krzyzaniak; M Siatecka; A Szyk; P Mucha; P Rekowski; G Kupryszewski; J Barciszewski
Journal:  Mol Biol Rep       Date:  2000-03       Impact factor: 2.316

Review 3.  RNA editing by adenosine deaminases that act on RNA.

Authors:  Brenda L Bass
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

4.  Elevated activity of the large form of ADAR1 in vivo: very efficient RNA editing occurs in the cytoplasm.

Authors:  Swee Kee Wong; Shuji Sato; David W Lazinski
Journal:  RNA       Date:  2003-05       Impact factor: 4.942

5.  Allosteric, chiral-selective drug binding to DNA.

Authors:  X Qu; J O Trent; I Fokt; W Priebe; J B Chaires
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

Review 6.  Activity regulation of adenosine deaminases acting on RNA (ADARs).

Authors:  Cesare Orlandi; Alessandro Barbon; Sergio Barlati
Journal:  Mol Neurobiol       Date:  2011-11-20       Impact factor: 5.590

7.  Crystal structure of a junction between two Z-DNA helices.

Authors:  Matteo de Rosa; Daniele de Sanctis; Ana Lucia Rosario; Margarida Archer; Alexander Rich; Alekos Athanasiadis; Maria Armenia Carrondo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

8.  The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences.

Authors:  A Herbert; M Schade; K Lowenhaupt; J Alfken; T Schwartz; L S Shlyakhtenko; Y L Lyubchenko; A Rich
Journal:  Nucleic Acids Res       Date:  1998-08-01       Impact factor: 16.971

9.  Incorporation of CC steps into Z-DNA: interplay between B-Z junction and Z-DNA helical formation.

Authors:  Jameson R Bothe; Ky Lowenhaupt; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2012-08-17       Impact factor: 3.162

10.  Construction of a Z-DNA-specific restriction endonuclease.

Authors:  Y G Kim; P S Kim; A Herbert; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

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