Literature DB >> 7634103

1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG.

J L Kim1, S K Burley.   

Abstract

The three-dimensional structure of a TATA box-binding protein (TBP) from Arabidopsis thaliana complexed with a fourteen base pair oligonucleotide bearing the Adenovirus major late promoter TATA element has been refined at 1.9 A resolution, giving a final crystallographic R-factor of 19.4%. Binding of the monomeric, saddle-shaped alpha/beta protein induces an unprecedented conformational change in the DNA. A detailed structural and functional analysis of this unusual protein-DNA complex is presented, with particular emphasis on the mechanisms of DNA deformation, TATA element recognition, and preinitiation complex assembly.

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Year:  1994        PMID: 7634103     DOI: 10.1038/nsb0994-638

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  64 in total

1.  Solution structure and dynamics of the A-T tract DNA decamer duplex d(GGTAATTACC)2: implications for recognition by minor groove binding drugs.

Authors:  C E Bostock-Smith; C A Laughton; M S Searle
Journal:  Biochem J       Date:  1999-08-15       Impact factor: 3.857

2.  Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: a transient polarization grating study.

Authors:  A N Naimushin; B S Fujimoto; J M Schurr
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

Review 3.  Macromolecular mimicry.

Authors:  P Nissen; M Kjeldgaard; J Nyborg
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

4.  Structural features of an influenza virus promoter and their implications for viral RNA synthesis.

Authors:  S H Bae; H K Cheong; J H Lee; C Cheong; M Kainosho; B S Choi
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

Review 5.  A structural basis for processivity.

Authors:  W A Breyer; B W Matthews
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

6.  A single-nucleotide natural variation (U4 to C4) in an influenza A virus promoter exhibits a large structural change: implications for differential viral RNA synthesis by RNA-dependent RNA polymerase.

Authors:  Mi-Kyung Lee; Sung-Hun Bae; Chin-Ju Park; Hae-Kap Cheong; Chaejoon Cheong; Byong-Seok Choi
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

7.  Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein.

Authors:  N Pastor; L Pardo; H Weinstein
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

8.  Role of the TATA binding protein-transcription factor IIB interaction in supporting basal and activated transcription in plant cells.

Authors:  S Pan; E Czarnecka-Verner; W B Gurley
Journal:  Plant Cell       Date:  2000-01       Impact factor: 11.277

9.  Stepwise bending of DNA by a single TATA-box binding protein.

Authors:  Simon F Tolić-Nørrelykke; Mette B Rasmussen; Francesco S Pavone; Kirstine Berg-Sørensen; Lene B Oddershede
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

10.  An inverted TATA box directs downstream transcription of the bone sialoprotein gene.

Authors:  J J Li; R H Kim; J Sodek
Journal:  Biochem J       Date:  1995-08-15       Impact factor: 3.857

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