Literature DB >> 7612623

The two pKa's of aspartate-85 and control of thermal isomerization and proton release in the arginine-82 to lysine mutant of bacteriorhodopsin.

S P Balashov1, R Govindjee, E S Imasheva, S Misra, T G Ebrey, Y Feng, R K Crouch, D R Menick.   

Abstract

To explore the role of Arg82 in the catalysis of proton transfer in bacteriorhodopsin, we replaced Arg82 with Lys, which is also positively charged at neutral pH but has an intrinsic pKa of about 1.7 pH units lower than that of Arg. In the R82K mutant expressed in Halobacterium salinarium, we found the following: (1) The pKa of the purple-to-blue transition at low pH (which reflects the pKa of Asp85) is 3.6 +/- 0.1. At high pH a second inflection in the blue-to-purple transition with pKa = 8.0 is found. The complex titration behavior of Asp85 indicates that the pKa of Asp85 depends on the protonation state of another amino acid residue, X', which has a pKa = 8.0 in R82K. The fit of the experimental data to a model of two interacting residues shows that deprotonation of X' at high pH causes a shift in the pKa of Asp85 from 3.7 to 6.0. In turn, protonation of Asp85 decreases the pKa of X' by 2.3 pH units. This suggests that X' can release a proton upon formation of the M intermediate and the concomitant protonation of Asp85 in the photocycle. (2) The rate constant of dark adaptation, kda, is proportional to the fraction of blue membrane between pH 2 and 10, indicating that thermal isomerization proceeds through the transient protonation of Asp85. The pH dependence of kda shows that two groups with pKal = 3.9 and pKa2 = 8.0 control the rate of dark adaptation in R82K. The 1.7 pH unit shift in pKa2 in R82K compared to the wild type (WT) (pKa2 = 9.7) supports the hypothesis that X' is Arg82 in WT and Lys82 in R82K (or at least that these groups are the principal part of a cluster of residues that constitute X'). (3) Under steady state illumination, the efficiency of proton transport in R82K incorporated in phosphatidylcholine vesicles is at least 40% of that in the WT. A flash-induced transient signal of the pH-sensitive dye pyranine is similar to that in the WT (proton release precedes uptake), but the amplitude is small in R82K (about 15% of that found in the WT), indicating that only a small fraction of protons is released fast in R82K. This supports the suggestions that Arg82 is associated with the proton release pathway (acts as a proton release group or part of a proton release complex) and that Lys cannot efficiently substitute for Arg in this process.(ABSTRACT TRUNCATED AT 400 WORDS)

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 7612623     DOI: 10.1021/bi00027a034

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  40 in total

1.  Molecular basis for pH sensitivity and proton transfer in green fluorescent protein: protonation and conformational substates from electrostatic calculations.

Authors:  C Scharnagl; R Raupp-Kossmann; S F Fischer
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

Review 2.  Bioenergetics of the Archaea.

Authors:  G Schäfer; M Engelhard; V Müller
Journal:  Microbiol Mol Biol Rev       Date:  1999-09       Impact factor: 11.056

3.  Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin.

Authors:  E Tajkhorshid; J Baudry; K Schulten; S Suhai
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

4.  Fourier transform infrared evidence for early deprotonation of Asp(85) at alkaline pH in the photocycle of bacteriorhodopsin mutants containing E194Q.

Authors:  T Lazarova; C Sanz; E Querol; E Padrós
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

5.  On the protein residues that control the yield and kinetics of O(630) in the photocycle of bacteriorhodopsin.

Authors:  Q Li; S Bressler; D Ovrutsky; M Ottolenghi; N Friedman; M Sheves
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

6.  Simulation analysis of the retinal conformational equilibrium in dark-adapted bacteriorhodopsin.

Authors:  J Baudry; S Crouzy; B Roux; J C Smith
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

7.  Time-resolved step-scan Fourier transform infrared spectroscopy reveals differences between early and late M intermediates of bacteriorhodopsin.

Authors:  C Rödig; I Chizhov; O Weidlich; F Siebert
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

8.  Characterization of the proton-transporting photocycle of pharaonis halorhodopsin.

Authors:  A Kulcsár; G I Groma; J K Lanyi; G Váró
Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

9.  pH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path.

Authors:  Oleg A Andreev; Alexander G Karabadzhak; Dhammika Weerakkody; Gregory O Andreev; Donald M Engelman; Yana K Reshetnyak
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

10.  Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II).

Authors:  Masayuki Iwamoto; Yuji Furutani; Yuki Sudo; Kazumi Shimono; Hideki Kandori; Naoki Kamo
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.