Literature DB >> 12124292

Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II).

Masayuki Iwamoto1, Yuji Furutani, Yuki Sudo, Kazumi Shimono, Hideki Kandori, Naoki Kamo.   

Abstract

Pharaonis phoborhodopsin (ppR; also pharaonis sensory rhodopsin II, psRII) is a receptor of the negative phototaxis of Natronobacterium pharaonis. By spectroscopic titration of D193N and D193E mutants, the pK(a) of the Schiff base was evaluated. Asp193 corresponds to Glu204 of bacteriorhodopsin (bR). The pK(a) of the Schiff base (SBH(+)) of D193N was approximately 10.1-10.0 (at XH(+)) and approximately 11.4-11.6 (at X) depending on the protonation state of a certain residue (designated by X) and independent of Cl(-), whereas those of the wild type and D193E were >12. The pK(a) values of XH(+) were approximately 11.8-11.2 at the state of SB, 10.5 at SBH(+) state in the presence of Cl(-), and 9.6 at SBH(+) without Cl(-). These imply the presence of a long-range interaction in the extracellular channel. Asp193 was suggested to be deprotonated in the present dodecyl-maltoside (DDM) solubilized wild-type ppR, which is contrary to Glu204 of bR. In the absence of salts, the irreversible denaturation of D193N (but not the wild type and D193E) occurred via a metastable state, into which the addition of Cl(-) reversed the intact pigment. This suggests that the negative charge at residue 193, which can be substituted by Cl(-), is necessary to maintain the proper conformation in the DDM-solubilized ppR.

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Year:  2002        PMID: 12124292      PMCID: PMC1302214          DOI: 10.1016/S0006-3495(02)75236-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

1.  Environment around the chromophore in pharaonis phoborhodopsin: mutation analysis of the retinal binding site.

Authors:  K Shimono; Y Ikeura; Y Sudo; M Iwamoto; N Kamo
Journal:  Biochim Biophys Acta       Date:  2001-12-01

2.  X-ray structure of sensory rhodopsin II at 2.1-A resolution.

Authors:  A Royant; P Nollert; K Edman; R Neutze; E M Landau; E Pebay-Peyroula; J Navarro
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-14       Impact factor: 11.205

3.  Photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectrophotometry.

Authors:  J Hirayama; Y Imamoto; Y Shichida; N Kamo; H Tomioka; T Yoshizawa
Journal:  Biochemistry       Date:  1992-02-25       Impact factor: 3.162

4.  Biochemical and photochemical properties of the photophobic receptors from Halobacterium halobium and Natronobacterium pharaonis.

Authors:  B Scharf; B Pevec; B Hess; M Engelhard
Journal:  Eur J Biochem       Date:  1992-06-01

5.  Reason for the lack of light-dark adaptation in pharaonis phoborhodopsin: reconstitution with 13-cis-retinal.

Authors:  J Hirayma; N Kamo; Y Imamoto; Y Shichida; T Yoshizawa
Journal:  FEBS Lett       Date:  1995-05-08       Impact factor: 4.124

6.  Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle.

Authors:  L S Brown; L Bonet; R Needleman; J K Lanyi
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

7.  Shape of the chromophore binding site in pharaonis phoborhodopsin from a study using retinal analogs.

Authors:  J Hirayama; Y Imamoto; Y Shichida; T Yoshizawa; A E Asato; R S Liu; N Kamo
Journal:  Photochem Photobiol       Date:  1994-10       Impact factor: 3.421

8.  Identification of a third rhodopsin-like pigment in phototactic Halobacterium halobium.

Authors:  R A Bogomolni; J L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

9.  The primary structure of sensory rhodopsin II: a member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II.

Authors:  R Seidel; B Scharf; M Gautel; K Kleine; D Oesterhelt; M Engelhard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-28       Impact factor: 11.205

10.  Effect of the arginine-82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release, and the photochemical cycle.

Authors:  S P Balashov; R Govindjee; M Kono; E Imasheva; E Lukashev; T G Ebrey; R K Crouch; D R Menick; Y Feng
Journal:  Biochemistry       Date:  1993-10-05       Impact factor: 3.162

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  5 in total

1.  Correlation of the O-intermediate rate with the pKa of Asp-75 in the dark, the counterion of the Schiff base of Pharaonis phoborhodopsin (sensory rhodopsin II).

Authors:  Masayuki Iwamoto; Yuki Sudo; Kazumi Shimono; Tsunehisa Araiso; Naoki Kamo
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

2.  A long-lived M-like state of phoborhodopsin that mimics the active state.

Authors:  Yuki Sudo; Tatsuya Nishihori; Masayuki Iwamoto; Kazumi Shimono; Chojiro Kojima; Naoki Kamo
Journal:  Biophys J       Date:  2008-03-28       Impact factor: 4.033

3.  Role of Arg-72 of pharaonis Phoborhodopsin (sensory rhodopsin II) on its photochemistry.

Authors:  Yukako Ikeura; Kazumi Shimono; Masayuki Iwamoto; Yuki Sudo; Naoki Kamo
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

4.  Time-resolved FTIR studies of sensory rhodopsin II (NpSRII) from Natronobacterium pharaonis: implications for proton transport and receptor activation.

Authors:  Michael Hein; Ansgar A Wegener; Martin Engelhard; Friedrich Siebert
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

Review 5.  Phototactic and chemotactic signal transduction by transmembrane receptors and transducers in microorganisms.

Authors:  Daisuke Suzuki; Hiroki Irieda; Michio Homma; Ikuro Kawagishi; Yuki Sudo
Journal:  Sensors (Basel)       Date:  2010-04-20       Impact factor: 3.576

  5 in total

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