Literature DB >> 7612611

Interactions among residues CD3, E7, E10, and E11 in myoglobins: attempts to simulate the ligand-binding properties of Aplysia myoglobin.

S J Smerdon1, S Krzywda, A M Brzozowski, G J Davies, A J Wilkinson, A Brancaccio, F Cutruzzolá, C T Allocatelli, M Brunori, T Li.   

Abstract

Site-directed mutations have been introduced singly and in combination at residues lysine/arginine45 (CD3), histidine64 (E7), threonine67 (E10), and valine68 (E11) in pig and sperm whale myoglobins. The mutations probe the roles of these key distal pocket residues and represent attempts to mimic the heme environment of Aplysia limacina myoglobin which achieves moderately high O2 affinity in the absence of a distal histidine. In the mollusc myoglobin, arginine-E10 is believed to swing into the heme pocket and provide a hydrogen bond to the bound O2. The association and dissociation rate constants for oxygen and carbon monoxide binding to H64V, T67A, T67V, T67E, T67R, V68I, V68T, H64V-T67R, H64V-V68T, H64V-V68I, and H64V-T67R-V68I pig myoglobin mutants and T67R, H64V-T67R, and R45D-H64V-T67R mutants of sperm whale myoglobin have been measured using stopped-flow rapid mixing and flash photolysis techniques. Replacement of histidine-E7 with valine in either pig or sperm whale myoglobin drastically lowers O2 affinity while increasing CO affinity. Two second-site mutations, T67R and V68T, increase O2 affinity in the H64V mutant, even though when introduced singly these mutations have no effect or lower KO2, respectively. However, the oxygen affinities of the H64V-T67R mutants are 5-10-fold lower than that of A. limacina myoglobin. The crystal structure of the pig H64V-T67R double mutant reveals that the valine-E7 side chain is approximately 1 A closer to the heme plane than in the mollusc protein which may restrict access of the arginine-E10 side chain into the heme pocket. The O2 affinity of the H64V-T67R double mutant is not altered by the R45D replacement but is reduced 10-fold by the V68I mutation. The interactive effects of the T67R, V68I, and V68T mutations with the H64V substitution are discussed in terms of O2, CO, and N3-binding and the crystal structures of the H64V-T67R, H64V-V68I, and H64V-V68T double-mutant proteins. In many instances, the effects of second-site mutations in the valine64 background are the opposite of those observed for the corresponding single mutations in the wild type background. These results can be understood in terms of the changes in the rate-determining steps for ligand association and dissociation and the loss of distal pocket water molecules which follow replacement of histidine64 by valine.

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Year:  1995        PMID: 7612611     DOI: 10.1021/bi00027a022

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Correlation of acid-induced conformational transition of ferricytochrome c with cyanide binding kinetics.

Authors:  Rastislav Varhac; Marián Antalík
Journal:  J Biol Inorg Chem       Date:  2008-03-04       Impact factor: 3.358

2.  Archaeal protoglobin structure indicates new ligand diffusion paths and modulation of haem-reactivity.

Authors:  Marco Nardini; Alessandra Pesce; Liesbet Thijs; Jennifer A Saito; Sylvia Dewilde; Maqsudul Alam; Paolo Ascenzi; Massimiliano Coletta; Chiara Ciaccio; Luc Moens; Martino Bolognesi
Journal:  EMBO Rep       Date:  2008-01-11       Impact factor: 8.807

3.  Structural determinants of fluoride and formate binding to hemoglobin and myoglobin: crystallographic and 1H-NMR relaxometric study.

Authors:  S Aime; M Fasano; S Paoletti; F Cutruzzolà; A Desideri; M Bolognesi; M Rizzi; P Ascenzi
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

4.  Structural and spectroscopic studies of azide complexes of horse heart myoglobin and the His-64-->Thr variant.

Authors:  R Maurus; R Bogumil; N T Nguyen; A G Mauk; G Brayer
Journal:  Biochem J       Date:  1998-05-15       Impact factor: 3.857

5.  Aplysia limacina myoglobin cDNA cloning: an alternative mechanism of oxygen stabilization as studied by active-site mutagenesis.

Authors:  F Cutruzzolà; C Travaglini Allocatelli; A Brancaccio; M Brunori
Journal:  Biochem J       Date:  1996-02-15       Impact factor: 3.857

Review 6.  Redox reactions of myoglobin.

Authors:  Mark P Richards
Journal:  Antioxid Redox Signal       Date:  2012-10-11       Impact factor: 8.401

7.  Myoglobin mutants giving the largest geminate yield in CO rebinding in the nanosecond time domain.

Authors:  T Sugimoto; M Unno; Y Shiro; Y Dou; M Ikeda-Saito
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

8.  An Engineered Glutamate in Biosynthetic Models of Heme-Copper Oxidases Drives Complete Product Selectivity by Tuning the Hydrogen-Bonding Network.

Authors:  Igor D Petrik; Roman Davydov; Maximilian Kahle; Braddock Sandoval; Sudharsan Dwaraknath; Pia Ädelroth; Brian Hoffman; Yi Lu
Journal:  Biochemistry       Date:  2021-01-19       Impact factor: 3.162

9.  Ru(CO)3Cl(Glycinate) (CORM-3): a carbon monoxide-releasing molecule with broad-spectrum antimicrobial and photosensitive activities against respiration and cation transport in Escherichia coli.

Authors:  Jayne Louise Wilson; Helen E Jesse; Bethan Hughes; Victoria Lund; Kathryn Naylor; Kelly S Davidge; Gregory M Cook; Brian E Mann; Robert K Poole
Journal:  Antioxid Redox Signal       Date:  2013-02-04       Impact factor: 8.401

10.  Effects of active site mutations in haemoglobin I from Lucina pectinata: a molecular dynamic study.

Authors:  Eunice Ramirez; Anthony Cruz; Diana Rodriguez; Lilen Uchima; Ruth Pietri; Alberto Santana; Juan López-Garriga; Gustavo E López
Journal:  Mol Simul       Date:  2008-08-22       Impact factor: 2.178

  10 in total

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