Literature DB >> 7608978

Rapid crystallization of chemically synthesized hammerhead RNAs using a double screening procedure.

W G Scott1, J T Finch, R Grenfell, J Fogg, T Smith, M J Gait, A Klug.   

Abstract

To find conditions for obtaining diffraction-quality crystals of a hammerhead RNA rapidly and reproducibly, we employed a "double screening" procedure in which we screened six different RNA synthetic constructs against 48 crystallization conditions using a newly devised sparse matrix. We obtained crystals immediately and diffraction-quality crystals of the sixth RNA construct within six months of initiating the screening of additional RNA sequences. The best crystals diffract to 2.9 A resolution when flash-cooled at synchrotron X-ray sources. Solid-support chemical synthesis combined with sparse matrix screening should allow rapid production of diffraction-quality crystals of a variety of small RNAs, reducing the time commitment for initiating such crystallography projects from several years to several months. The synthetic approach also makes introduction of modified bases to prevent self-cleavage and to generate isomorphous heavy-atom derivative crystals a rapid and straightforward process.

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Year:  1995        PMID: 7608978     DOI: 10.1006/jmbi.1995.0380

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  18 in total

1.  Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization.

Authors:  L D Sherlin; T L Bullock; T A Nissan; J J Perona; F J Lariviere; O C Uhlenbeck; S A Scaringe
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

2.  A general method for rapid and nondenaturing purification of RNAs.

Authors:  Jeffrey S Kieft; Robert T Batey
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

3.  Determining structures of RNA aptamers and riboswitches by X-ray crystallography.

Authors:  Andrea L Edwards; Andrew D Garst; Robert T Batey
Journal:  Methods Mol Biol       Date:  2009

4.  Crystallization of macromolecules.

Authors:  Troy Messick; Ronen Marmorstein
Journal:  Curr Protoc Protein Sci       Date:  2004-02

5.  Visualization of RNA crystal growth by atomic force microscopy.

Authors:  J D Ng; Y G Kuznetsov; A J Malkin; G Keith; R Giegé; A McPherson
Journal:  Nucleic Acids Res       Date:  1997-07-01       Impact factor: 16.971

Review 6.  Diffraction Techniques in Structural Biology.

Authors:  Martin Egli
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2016-06-01

7.  A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

Authors:  B Masquida; C Sauter; E Westhof
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

8.  Crystallization of macromolecules.

Authors:  David Friedmann; Troy Messick; Ronen Marmorstein
Journal:  Curr Protoc Protein Sci       Date:  2011-11

9.  Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA.

Authors:  Alexei V Kazantsev; Angelika A Krivenko; Norman R Pace
Journal:  RNA       Date:  2008-12-17       Impact factor: 4.942

10.  Expression, purification, crystallization and preliminary X-ray analysis of a nucleoside kinase from the hyperthermophile Methanocaldococcus jannaschii.

Authors:  Linda Arnfors; Thomas Hansen; Winfried Meining; Peter Schönheit; Rudolf Ladenstein
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-01
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