Literature DB >> 7606503

DNA Strider. An inexpensive sequence analysis package for the Macintosh.

S E Douglas1.   

Abstract

DNA Strider is a user-friendly Macintosh program designed for analysis of molecular sequence data. The program shows great versatility in choice of genetic codes, restriction enzymes, algorithms for hydropathy plots, and interconversions between types of sequence data. It is very straightforward and interacts well with other sequence and phylogenetic analysis packages, importing and exporting data easily. The graphic outputs can be used directly for manuscript-quality figures, or exported to more sophisticated text or graphic programs.

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Year:  1995        PMID： 7606503     DOI： 10.1007/BF02821333

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN： 1073-6085            Impact factor:   2.695


  7 in total

1.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

2.  IBM microcomputer programs that analyze DNA sequences for tRNA genes.

Authors:  R D Shortridge; I L Pirtle; R M Pirtle
Journal:  Comput Appl Biosci       Date:  1986-04

3.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

4.  Prediction of protein antigenic determinants from amino acid sequences.

Authors:  T P Hopp; K R Woods
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

5.  'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers.

Authors:  C Marck
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

6.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

7.  The hydrophobic moment detects periodicity in protein hydrophobicity.

Authors:  D Eisenberg; R M Weiss; T C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  1984-01       Impact factor: 11.205
  7 in total
  13 in total

1.  Codon usage and bias in mitochondrial genomes of parasitic platyhelminthes.

Authors:  Thanh Hoa Le; Donald Peter McManus; David Blair
Journal:  Korean J Parasitol       Date:  2004-12       Impact factor: 1.341

2.  Genetic characterization of the conjugative DNA processing system of enterococcal plasmid pCF10.

Authors:  Jack H Staddon; Edward M Bryan; Dawn A Manias; Yuqing Chen; Gary M Dunny
Journal:  Plasmid       Date:  2006-06-13       Impact factor: 3.466

3.  Post-harvest regulated gene expression and splicing efficiency in storage roots of sugar beet (Beta vulgaris L.).

Authors:  Alexander Rotthues; Jeannette Kappler; Anna Lichtfuss; Dorothee U Kloos; Dietmar J Stahl; Reinhard Hehl
Journal:  Planta       Date:  2008-03-07       Impact factor: 4.116

4.  VanB-type Enterococcus faecium clinical isolate successively inducibly resistant to, dependent on, and constitutively resistant to vancomycin.

Authors:  Alvaro San Millan; Florence Depardieu; Sylvain Godreuil; Patrice Courvalin
Journal:  Antimicrob Agents Chemother       Date:  2009-03-09       Impact factor: 5.191

5.  Lyme disease-causing Borrelia species encode multiple lipoproteins homologous to peptide-binding proteins of ABC-type transporters.

Authors:  J A Kornacki; D B Oliver
Journal:  Infect Immun       Date:  1998-09       Impact factor: 3.441

6.  Alternative splicing of the maize Ac transposase transcript in transgenic sugar beet (Beta vulgaris L.).

Authors:  Ralph Lisson; Jan Hellert; Malte Ringleb; Fabian Machens; Josef Kraus; Reinhard Hehl
Journal:  Plant Mol Biol       Date:  2010-05-29       Impact factor: 4.076

7.  An evolutionarily conserved family of virion tail needles related to bacteriophage P22 gp26: correlation between structural stability and length of the alpha-helical trimeric coiled coil.

Authors:  Anshul Bhardwaj; Nancy Walker-Kopp; Sherwood R Casjens; Gino Cingolani
Journal:  J Mol Biol       Date:  2009-05-29       Impact factor: 5.469

8.  Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.

Authors:  Julianne H Grose; Sherwood R Casjens
Journal:  Virology       Date:  2014-11       Impact factor: 3.616

9.  An evolutionary analysis of flightin reveals a conserved motif unique and widespread in Pancrustacea.

Authors:  Felipe N Soto-Adames; Pedro Alvarez-Ortiz; Jim O Vigoreaux
Journal:  J Mol Evol       Date:  2013-11-23       Impact factor: 2.395

10.  Tandem repeat markers as novel diagnostic tools for high resolution fingerprinting of Wolbachia.

Authors:  Markus Riegler; Iñaki Iturbe-Ormaetxe; Megan Woolfit; Wolfgang J Miller; Scott L O'Neill
Journal:  BMC Microbiol       Date:  2012-01-18       Impact factor: 3.605
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