Literature DB >> 7592429

Sequence and mutational analysis of a tartrate utilization operon from Agrobacterium vitis.

P Crouzet1, L Otten.   

Abstract

The grapevine is the natural host of the tumorigenic bacterium Agrobacterium vitis. Most of the A. vitis isolates can use tartrate, an unusually abundant compound in grapevine. The nopaline strain, AB4, contains a 170-kb conjugative plasmid (pTrAB4) encoding tartrate utilization. A 5.65-kb pTrAB4 region which enables non-tartrate-utilizing Agrobacterium tumefaciens to grow on tartrate was sequenced and mutagenized with the transcriptional fusion transposon Tn5-uidA1. This DNA fragment contains four intact open reading frames (ORFs) (ttuABCD) required for tartrate-dependent growth. The mutant phenotypes of each ORF, their homologies to published sequences, and their induction patterns allowed us to propose a model for tartrate utilization in A. vitis. ttuA encodes a LysR-like transcriptional activator and is transcribed in the absence of tartrate. ttuB codes for a protein with homology to transporter proteins and is required for entry of tartrate into bacteria. ttuC codes for a tartrate dehydrogenase, while ttuD lacks homology to known sequences; the growth properties of ttuD mutants suggest that TtuD catalyzes the second step in tartrate degradation. A fifth incomplete ORF (ttuE) encodes a pyruvate kinase which is induced by tartrate and required for optimal growth. Although the ttuABCD fragment allows growth of A. tumefaciens on tartrate, it does not provide full tartrate utilization in the original A. vitis background.

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Year:  1995        PMID: 7592429      PMCID: PMC177504          DOI: 10.1128/jb.177.22.6518-6526.1995

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  32 in total

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Journal:  Biochem J       Date:  1963-10       Impact factor: 3.857

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Journal:  J Biol Chem       Date:  1965-07       Impact factor: 5.157

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Journal:  Biochem Z       Date:  1964-12-07

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Authors:  M SHILO
Journal:  J Gen Microbiol       Date:  1957-04

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Authors:  W R MARTIN; J W FOSTER
Journal:  J Bacteriol       Date:  1957-05       Impact factor: 3.490

6.  Regulation of the Bacillus subtilis alsS, alsD, and alsR genes involved in post-exponential-phase production of acetoin.

Authors:  M C Renna; N Najimudin; L R Winik; S A Zahler
Journal:  J Bacteriol       Date:  1993-06       Impact factor: 3.490

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Authors:  P A Tipton; B S Beecher
Journal:  Arch Biochem Biophys       Date:  1994-08-15       Impact factor: 4.013

8.  Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate.

Authors:  C S Harwood; N N Nichols; M K Kim; J L Ditty; R E Parales
Journal:  J Bacteriol       Date:  1994-11       Impact factor: 3.490

9.  Anaerobic growth of Salmonella typhimurium on L(+)- and D(-)-tartrate involves an oxaloacetate decarboxylase Na+ pump.

Authors:  G Woehlke; P Dimroth
Journal:  Arch Microbiol       Date:  1994       Impact factor: 2.552

10.  Identification of the L-tartrate dehydratase genes (ttdA and ttdB) of Escherichia coli and evolutionary relationship with the class I fumarase genes.

Authors:  S K Reaney; C Begg; S J Bungard; J R Guest
Journal:  J Gen Microbiol       Date:  1993-07
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  12 in total

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2.  Identification and mutation of a gene required for glycerate kinase activity from a facultative methylotroph, Methylobacterium extorquens AM1.

Authors:  L Chistoserdova; M E Lidstrom
Journal:  J Bacteriol       Date:  1997-08       Impact factor: 3.490

3.  Characterization of the phthalate permease OphD from Burkholderia cepacia ATCC 17616.

Authors:  H K Chang; G J Zylstra
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

4.  Characterization of plasmid-borne and chromosome-encoded traits of Agrobacterium biovar 1, 2, and 3 strains from France.

Authors:  M Ridé; S Ridé; A Petit; C Bollet; Y Dessaux; L Gardan
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

Review 5.  Major facilitator superfamily.

Authors:  S S Pao; I T Paulsen; M H Saier
Journal:  Microbiol Mol Biol Rev       Date:  1998-03       Impact factor: 11.056

6.  Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways.

Authors:  Chen Yang; Dmitry A Rodionov; Irina A Rodionova; Xiaoqing Li; Andrei L Osterman
Journal:  J Bacteriol       Date:  2007-12-21       Impact factor: 3.490

7.  Escherichia coli D-malate dehydrogenase, a generalist enzyme active in the leucine biosynthesis pathway.

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Journal:  J Biol Chem       Date:  2014-08-26       Impact factor: 5.157

8.  Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics.

Authors:  Vinoy K Ramachandran; Alison K East; Ramakrishnan Karunakaran; J Allan Downie; Philip S Poole
Journal:  Genome Biol       Date:  2011-10-21       Impact factor: 13.583

9.  A comprehensive update of the sequence and structure classification of kinases.

Authors:  Sara Cheek; Krzysztof Ginalski; Hong Zhang; Nick V Grishin
Journal:  BMC Struct Biol       Date:  2005-03-16

10.  Glycerate kinase of the hyperthermophilic archaeon Thermoproteus tenax: new insights into the phylogenetic distribution and physiological role of members of the three different glycerate kinase classes.

Authors:  Daniel Kehrer; Hatim Ahmed; Henner Brinkmann; Bettina Siebers
Journal:  BMC Genomics       Date:  2007-08-31       Impact factor: 3.969

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