Literature DB >> 7579647

Helix design, prediction and stability.

V Muñoz1, L Serrano.   

Abstract

Recent work revealing that our knowledge is now sufficient to build a reasonable quantitative model for the helix/coil transition in heteropolypeptides represents a watershed in research into alpha-helix stability, prediction and design. The opportunity is presented to design specific alpha-helix propensity patterns that may be used both to modify thermodynamic properties of target proteins and peptides, and for de novo protein design. Despite these advances, the picture is not yet complete and further studies of still poorly characterized factors are required to obtain a more precise understanding of alpha-helix stability.

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Year:  1995        PMID: 7579647     DOI: 10.1016/0958-1669(95)80066-2

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  22 in total

1.  Position dependence of amino acid intrinsic helical propensities II: non-charged polar residues: Ser, Thr, Asn, and Gln.

Authors:  M Petukhov; K Uegaki; N Yumoto; S Yoshikawa; L Serrano
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

2.  Design of a minimal protein oligomerization domain by a structural approach.

Authors:  P Burkhard; M Meier; A Lustig
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

3.  Elongation of the BH8 beta-hairpin peptide: Electrostatic interactions in beta-hairpin formation and stability.

Authors:  M Ramírez-Alvarado; F J Blanco; L Serrano
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

4.  Understanding beta-hairpin formation by molecular dynamics simulations of unfolding.

Authors:  J Lee; S Shin
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

Review 5.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

6.  Tolerance of Arc repressor to multiple-alanine substitutions.

Authors:  B M Brown; R T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

7.  Molecular basis of coiled-coil formation.

Authors:  Michel O Steinmetz; Ilian Jelesarov; William M Matousek; Srinivas Honnappa; Wolfgang Jahnke; John H Missimer; Sabine Frank; Andrei T Alexandrescu; Richard A Kammerer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

8.  Alpha-Helix folding in the presence of structural constraints.

Authors:  Janne A Ihalainen; Beatrice Paoli; Stefanie Muff; Ellen H G Backus; Jens Bredenbeck; G Andrew Woolley; Amedeo Caflisch; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-09       Impact factor: 11.205

9.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

10.  Design of thiolate rich metal binding sites within a peptidic framework.

Authors:  Marek Łuczkowski; Monika Stachura; Virgil Schirf; Borries Demeler; Lars Hemmingsen; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2008-12-01       Impact factor: 5.165

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