Literature DB >> 7565745

The release element of the yeast polymerase I transcription terminator can function independently of Reb1p.

S W Jeong1, W H Lang, R H Reeder.   

Abstract

The Saccharomyces cerevisiae polymerase I (polI) transcription terminator utilizes a DNA-binding protein (Reb1p) as part of a signal that causes the polymerase to pause prior to release from the template. To study the release element of the terminator, independent of the Reb1p pause signal, we have replaced the Reb1p binding site with the binding site for the lac repressor, which acts as a self-contained heterologous pause signal for polI. Release efficiency is maximal when the lac repressor causes polI to pause in exactly the same position that Reb1p would have caused it to pause, suggesting that polI must be precisely positioned for transcript release to occur. Mutational analysis shows that the release element is a region rich in T residues which codes for the extreme 3' end of the transcript and which has no apparent ability to form hairpins when transcribed into RNA. We discuss possible mechanisms whereby this polI release element might function.

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Year:  1995        PMID: 7565745      PMCID: PMC230844          DOI: 10.1128/MCB.15.11.5929

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  18 in total

1.  3'-end formation of mouse pre-rRNA involves both transcription termination and a specific processing reaction.

Authors:  A Kuhn; I Grummt
Journal:  Genes Dev       Date:  1989-02       Impact factor: 11.361

2.  Transcription of human ribosomal DNA may terminate at multiple sites.

Authors:  G Sáfrány; R Kominami; M Muramatsu; E J Hidvégi
Journal:  Gene       Date:  1989-07-15       Impact factor: 3.688

3.  Analysis of clustered point mutations in the human ribosomal RNA gene promoter by transient expression in vivo.

Authors:  M H Jones; R M Learned; R Tjian
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

Review 4.  Transcription termination and the regulation of gene expression.

Authors:  T Platt
Journal:  Annu Rev Biochem       Date:  1986       Impact factor: 23.643

5.  lac Repressor blocks transcribing RNA polymerase and terminates transcription.

Authors:  U Deuschle; R Gentz; H Bujard
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

6.  A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs.

Authors:  P J Farnham; T Platt
Journal:  Cell       Date:  1980-07       Impact factor: 41.582

7.  Specific interaction of the murine transcription termination factor TTF I with class-I RNA polymerases.

Authors:  A Kuhn; I Bartsch; I Grummt
Journal:  Nature       Date:  1990-04-05       Impact factor: 49.962

8.  Characterization of three sites of RNA 3' end formation in the Xenopus ribosomal gene spacer.

Authors:  P Labhart; R H Reeder
Journal:  Cell       Date:  1986-05-09       Impact factor: 41.582

9.  Evolutionary changes of sequences and factors that direct transcription termination of human and mouse ribsomal genes.

Authors:  I Bartsch; C Schoneberg; I Grummt
Journal:  Mol Cell Biol       Date:  1987-07       Impact factor: 4.272

10.  Different domains of the murine RNA polymerase I-specific termination factor mTTF-I serve distinct functions in transcription termination.

Authors:  R Evers; A Smid; U Rudloff; F Lottspeich; I Grummt
Journal:  EMBO J       Date:  1995-03-15       Impact factor: 11.598

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  17 in total

1.  Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon.

Authors:  Robert M Yarrington; Sarah M Richardson; Cheng Ran Lisa Huang; Jef D Boeke
Journal:  Genetics       Date:  2011-11-30       Impact factor: 4.562

2.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

3.  Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination.

Authors:  Junya Kawauchi; Hannah Mischo; Priscilla Braglia; Ana Rondon; Nick J Proudfoot
Journal:  Genes Dev       Date:  2008-04-15       Impact factor: 11.361

4.  Definition of transcriptional pause elements in fission yeast.

Authors:  A Aranda; N J Proudfoot
Journal:  Mol Cell Biol       Date:  1999-02       Impact factor: 4.272

5.  A novel RNA polymerase I-dependent RNase activity that shortens nascent transcripts from the 3' end.

Authors:  H Tschochner
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

6.  In vitro analysis of elongation and termination by mutant RNA polymerases with altered termination behavior.

Authors:  S A Shaaban; E V Bobkova; D M Chudzik; B D Hall
Journal:  Mol Cell Biol       Date:  1996-11       Impact factor: 4.272

7.  Characterization of a transcription terminator of the procyclin PARP A unit of Trypanosoma brucei.

Authors:  M Berberof; A Pays; S Lips; P Tebabi; E Pays
Journal:  Mol Cell Biol       Date:  1996-03       Impact factor: 4.272

8.  Identification of a transcript release activity acting on ternary transcription complexes containing murine RNA polymerase I.

Authors:  S W Mason; E E Sander; I Grummt
Journal:  EMBO J       Date:  1997-01-02       Impact factor: 11.598

9.  Molecular cloning and analysis of Schizosaccharomyces pombe Reb1p: sequence-specific recognition of two sites in the far upstream rDNA intergenic spacer.

Authors:  A Zhao; A Guo; Z Liu; L Pape
Journal:  Nucleic Acids Res       Date:  1997-02-15       Impact factor: 16.971

10.  Binding of the termination factor Nsi1 to its cognate DNA site is sufficient to terminate RNA polymerase I transcription in vitro and to induce termination in vivo.

Authors:  Philipp Merkl; Jorge Perez-Fernandez; Michael Pilsl; Alarich Reiter; Lydia Williams; Jochen Gerber; Maria Böhm; Rainer Deutzmann; Joachim Griesenbeck; Philipp Milkereit; Herbert Tschochner
Journal:  Mol Cell Biol       Date:  2014-08-04       Impact factor: 4.272

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