Literature DB >> 7545157

Properties of peptide chain release factor 2 from Streptomyces coelicolor A3(2): conserved primary structure but no frameshift regulation.

H Ogawara1, H Urabe, R Ohtaki, Y Nakamura.   

Abstract

A gene was cloned from Streptomyces coelicolor A3(2). It encodes a protein of 368 amino acid residues with a high degree of similarity to prokaryotic release factor 2. However, it has neither an internal stop codon nor the Shine-Dalgarno-like sequence immediately upstream of the assumed frameshift position. The gene is expressed and functional in Escherichia coli as peptide chain release factor 2. The transcription start site is at or adjacent to the translational start site. The size of the mRNA detected by hybridization suggests that the gene (prfB) is monocistronic in S. coelicolor A3(2). However, about 80 bp upstream of the gene there is an operon which is composed of two genes encoding eukaryotic-type serine/threonine kinases.

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Year:  1995        PMID: 7545157      PMCID: PMC177330          DOI: 10.1128/jb.177.18.5342-5345.1995

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  18 in total

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Authors:  Y Nakamura; S Mizusawa; D L Court; A Tsugawa
Journal:  J Mol Biol       Date:  1986-05-05       Impact factor: 5.469

2.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

3.  Improved estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal:  Nat New Biol       Date:  1973-11-14

4.  Release factors differing in specificity for terminator codons.

Authors:  E Scolnick; R Tompkins; T Caskey; M Nirenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1968-10       Impact factor: 11.205

5.  Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.

Authors:  W J Craigen; R G Cook; W P Tate; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

6.  Temporal analysis of general control of amino acid biosynthesis in Saccharomyces cerevisiae: role of positive regulatory genes in initiation and maintenance of mRNA derepression.

Authors:  M D Penn; G Thireos; H Greer
Journal:  Mol Cell Biol       Date:  1984-03       Impact factor: 4.272

7.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

8.  Conditionally lethal and recessive UGA-suppressor mutations in the prfB gene encoding peptide chain release factor 2 of Escherichia coli.

Authors:  K Kawakami; T Inada; Y Nakamura
Journal:  J Bacteriol       Date:  1988-11       Impact factor: 3.490

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Cloning, sequencing and expression of serine/threonine kinase-encoding genes from Streptomyces coelicolor A3(2).

Authors:  H Urabe; H Ogawara
Journal:  Gene       Date:  1995-02-03       Impact factor: 3.688

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  5 in total

1.  A peptide chain release factor 2 affects the stability of UGA-containing transcripts in Arabidopsis chloroplasts.

Authors:  Jörg Meurer; Lina Lezhneva; Katrin Amann; Manfred Gödel; Staver Bezhani; Irena Sherameti; Ralf Oelmüller
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

2.  Does disparate occurrence of autoregulatory programmed frameshifting in decoding the release factor 2 gene reflect an ancient origin with loss in independent lineages?

Authors:  B C Persson; J F Atkins
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

3.  Is the in-frame termination signal of the Escherichia coli release factor-2 frameshift site weakened by a particularly poor context?

Authors:  L L Major; E S Poole; M E Dalphin; S A Mannering; W P Tate
Journal:  Nucleic Acids Res       Date:  1996-07-15       Impact factor: 16.971

4.  Conserved motifs in prokaryotic and eukaryotic polypeptide release factors: tRNA-protein mimicry hypothesis.

Authors:  K Ito; K Ebihara; M Uno; Y Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-28       Impact factor: 11.205

5.  Suppression of TGA mutations in the Bacillus subtilis spoIIR gene by prfB mutations.

Authors:  M L Karow; E J Rogers; P S Lovett; P J Piggot
Journal:  J Bacteriol       Date:  1998-08       Impact factor: 3.490

  5 in total

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