Literature DB >> 7543675

Kinking of DNA and RNA by base bulges.

D M Lilley1.   

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Year:  1995        PMID： 7543675      PMCID： PMC41294          DOI： 10.1073/pnas.92.16.7140

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  28 in total

1.  Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex.

Authors:  E Nikonowicz; V Roongta; C R Jones; D G Gorenstein
Journal:  Biochemistry       Date:  1989-10-31       Impact factor: 3.162

2.  Effects of bulge composition and flanking sequence on the kinking of DNA by bulged bases.

Authors:  Y H Wang; J Griffith
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

3.  Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer.

Authors:  C Gohlke; A I Murchie; D M Lilley; R M Clegg
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

4.  The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles).

Authors:  A Bhattacharyya; D M Lilley
Journal:  Nucleic Acids Res       Date:  1989-09-12       Impact factor: 16.971

5.  NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTCGCG)2 via a hybrid relaxation matrix procedure.

Authors:  E P Nikonowicz; R P Meadows; D G Gorenstein
Journal:  Biochemistry       Date:  1990-05-01       Impact factor: 3.162

6.  Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization.

Authors:  S A Woodson; D M Crothers
Journal:  Biopolymers       Date:  1989-06       Impact factor: 2.505

7.  Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: possible relevance to the folding of single-stranded nucleic acids.

Authors:  C H Hsieh; J D Griffith
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

8.  Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization.

Authors:  S A Woodson; D M Crothers
Journal:  Biochemistry       Date:  1988-05-03       Impact factor: 3.162

9.  Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

Authors:  D Hare; L Shapiro; D J Patel
Journal:  Biochemistry       Date:  1986-11-18       Impact factor: 3.162

10.  Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge.

Authors:  F Aboul-ela; A I Murchie; S W Homans; D M Lilley
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469
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  36 in total

1.  DNA recognition, strand selectivity, and cleavage mode during integrase family site-specific recombination.

Authors:  G Tribble; Y T Ahn; J Lee; T Dandekar; M Jayaram
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

2.  Heteroduplex mobility assay (HMA) pre-screening: an improved strategy for the rapid identification of inserts selected from phage-displayed peptide libraries.

Authors:  F Fack; S Deroo; S Kreis; C P Muller
Journal:  Mol Divers       Date:  2000       Impact factor: 2.943

3.  Two-dimensional conformation-dependent electrophoresis (2D-CDE) to separate DNA fragments containing unmatched bulge from complex DNA samples.

Authors:  Gudmundur H Gunnarsson; Hans G Thormar; Bjarki Gudmundsson; Lina Akesson; Jon J Jonsson
Journal:  Nucleic Acids Res       Date:  2004-02-03       Impact factor: 16.971

4.  DNA bending and unbending by MutS govern mismatch recognition and specificity.

Authors:  Hong Wang; Yong Yang; Mark J Schofield; Chunwei Du; Yonatan Fridman; Susan D Lee; Erik D Larson; James T Drummond; Eric Alani; Peggy Hsieh; Dorothy A Erie
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-21       Impact factor: 11.205

5.  Stability of single-nucleotide bulge loops embedded in a GAAA RNA hairpin stem.

Authors:  Geoffrey F S Lim; Gregory E Merz; Michael D McCann; Jocelyn M Gruskiewicz; Martin J Serra
Journal:  RNA       Date:  2012-02-16       Impact factor: 4.942

6.  A structural database for k-turn motifs in RNA.

Authors:  Kersten T Schroeder; Scott A McPhee; Jonathan Ouellet; David M J Lilley
Journal:  RNA       Date:  2010-06-18       Impact factor: 4.942

7.  Non-nearest-neighbor dependence of the stability for RNA group II single-nucleotide bulge loops.

Authors:  Michael D McCann; Geoffery F S Lim; Michelle L Manni; Julie Estes; Kelly A Klapec; Gregory D Frattini; Robert J Knarr; Jessica L Gratton; Martin J Serra
Journal:  RNA       Date:  2010-11-18       Impact factor: 4.942

8.  Noncovalent DNA binding drives DNA alkylation by leinamycin: evidence that the Z,E-5-(thiazol-4-yl)-penta-2,4-dienone moiety of the natural product serves as an atypical DNA intercalator.

Authors:  Mostafa I Fekry; Jozsef Szekely; Sanjay Dutta; Leonid Breydo; Hong Zang; Kent S Gates
Journal:  J Am Chem Soc       Date:  2011-10-18       Impact factor: 15.419

Review 9.  Molecular control of vertebrate iron homeostasis by iron regulatory proteins.

Authors:  Michelle L Wallander; Elizabeth A Leibold; Richard S Eisenstein
Journal:  Biochim Biophys Acta       Date:  2006-05-17

10.  Probing DNA bulges with designed helical spirocyclic molecules.

Authors:  Lizzy S Kappen; Yiqing Lin; Graham B Jones; Irving H Goldberg
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162
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