Literature DB >> 7540005

Characterization of DNASE I hypersensitive sites in the 120kb 5' to the CFTR gene.

A N Smith1, C J Wardle, A Harris.   

Abstract

The chromatin structure of 120kb of genomic DNA 5' to the CFTR gene has been analysed in a number of CFTR expressing and non-expressing cell types, including primary genital duct epithelial cells. Novel DNAse I hypersensitive sites have been observed at -79.5kb and -20.5kb 5' to the ATG translation start codon of the CFTR coding sequence. Neither of these sites appears to show strong correlation with CFTR expression in the cell types investigated, hence they are unlikely to reflect the sites of binding of the major CFTR tissue specific regulator(s). However, they may still play an important part in the complex series of events involved in the regulation of CFTR transcription.

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Year:  1995        PMID: 7540005     DOI: 10.1006/bbrc.1995.1807

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  23 in total

1.  Genomic sequence analysis of Fugu rubripes CFTR and flanking genes in a 60 kb region conserving synteny with 800 kb of human chromosome 7.

Authors:  H Davidson; M S Taylor; A Doherty; A C Boyd; D J Porteous
Journal:  Genome Res       Date:  2000-08       Impact factor: 9.043

2.  Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes.

Authors:  R E Ellsworth; D C Jamison; J W Touchman; S L Chissoe; V V Braden Maduro; G G Bouffard; N L Dietrich; S M Beckstrom-Sternberg; L M Iyer; L A Weintraub; M Cotton; L Courtney; J Edwards; R Maupin; P Ozersky; T Rohlfing; P Wohldmann; T Miner; K Kemp; J Kramer; I Korf; K Pepin; L Antonacci-Fulton; R S Fulton; P Minx; L W Hillier; R K Wilson; R H Waterston; W Miller; E D Green
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

3.  Complementation of null CF mice with a human CFTR YAC transgene.

Authors:  A L Manson; A E Trezise; L J MacVinish; K D Kasschau; N Birchall; V Episkopou; G Vassaux; M J Evans; W H Colledge; A W Cuthbert; C Huxley
Journal:  EMBO J       Date:  1997-07-16       Impact factor: 11.598

4.  Cross-species characterization of the promoter region of the cystic fibrosis transmembrane conductance regulator gene reveals multiple levels of regulation.

Authors:  S Vuillaumier; I Dixmeras; H Messaï; C Lapouméroulie; D Lallemand; J Gekas; F F Chehab; C Perret; J Elion; E Denamur
Journal:  Biochem J       Date:  1997-11-01       Impact factor: 3.857

5.  Genomic approaches for the discovery of CFTR regulatory elements.

Authors:  Christopher J Ott; Ann Harris
Journal:  Transcription       Date:  2011 Jan-Feb

6.  A dicistronic construct allows easy detection of human CFTR expression from YAC DNA in human cells.

Authors:  G Vassaux; C Huxley
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

7.  In vivo analysis of DNase I hypersensitive sites in the human CFTR gene.

Authors:  D S Moulin; A L Manson; H N Nuthall; D J Smith; C Huxley; A Harris
Journal:  Mol Med       Date:  1999-04       Impact factor: 6.354

8.  HNF1alpha is involved in tissue-specific regulation of CFTR gene expression.

Authors:  Nathalie Mouchel; Sytse A Henstra; Victoria A McCarthy; Sarah H Williams; Marios Phylactides; Ann Harris
Journal:  Biochem J       Date:  2004-03-15       Impact factor: 3.857

9.  Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene.

Authors:  Nele Gheldof; Emily M Smith; Tomoko M Tabuchi; Christoph M Koch; Ian Dunham; John A Stamatoyannopoulos; Job Dekker
Journal:  Nucleic Acids Res       Date:  2010-03-31       Impact factor: 16.971

Review 10.  Novel regulatory mechanisms for the CFTR gene.

Authors:  Christopher J Ott; Neil P Blackledge; Shih-Hsing Leir; Ann Harris
Journal:  Biochem Soc Trans       Date:  2009-08       Impact factor: 5.407

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