Literature DB >> 7530046

Lipid-peptide interface: valine conformation and dynamics in the gramicidin channel.

K C Lee1, S Huo, T A Cross.   

Abstract

High-resolution dynamic and structural characterizations have been achieved for each of the valine side chains of the gramicidin channel while solubilized in hydrated lipid bilayers. The characterizations have been achieved by 2H NMR spectra of both oriented and unoriented samples obtained at 36 and 5 degrees C, respectively. Powder patterns displaying intermediate time frame averaging provide dynamic information, and quadrupole splittings from aligned samples provide orientational constraints for the side chain structure. Librational amplitudes for each site throughout the side chain have also been characterized. Val6 and Val8 are shown to be fixed in rotameric states, potentially constraining two of the indole rings and the functionally important indole dipole moment orientations. Val1 and Val7 undergo three-state jump motions. The jump frequencies increase from the microsecond to nanosecond time frame upon increasing the temperature through the lipid phase transition. For the same temperature range, there is no evidence for changes in conformational state populations. Despite small differences in the substate populations for the two residues, the motions may be loosely coupled as indicated by the high-resolution structure.

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Year:  1995        PMID: 7530046     DOI: 10.1021/bi00003a020

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Validation of the single-stranded channel conformation of gramicidin A by solid-state NMR.

Authors:  F Kovacs; J Quine; T A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

2.  Noncontact dipole effects on channel permeation. II. Trp conformations and dipole potentials in gramicidin A.

Authors:  A E Dorigo; D G Anderson; D D Busath
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

3.  Macromolecular structural elucidation with solid-state NMR-derived orientational constraints.

Authors:  R R Ketchem; K C Lee; S Huo; T A Cross
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

4.  The dielectric properties of water within model transbilayer pores.

Authors:  M S Sansom; G R Smith; C Adcock; P C Biggin
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

5.  Solid state NMR: The essential technology for helical membrane protein structural characterization.

Authors:  Timothy A Cross; Vindana Ekanayake; Joana Paulino; Anna Wright
Journal:  J Magn Reson       Date:  2013-12-19       Impact factor: 2.229

6.  Simulation study of a gramicidin/lipid bilayer system in excess water and lipid. I. Structure of the molecular complex.

Authors:  S W Chiu; S Subramaniam; E Jakobsson
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

7.  Structural implications of a Val-->Glu mutation in transmembrane peptides from the EGF receptor.

Authors:  S Sharpe; C W Grant; K R Barber; J Giusti; M R Morrow
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

8.  On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation.

Authors:  Toby W Allen; O S Andersen; Benoit Roux
Journal:  J Gen Physiol       Date:  2004-12       Impact factor: 4.086

9.  Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example.

Authors:  Mei Hong; Tatiana V Mishanina; Sarah D Cady
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

10.  Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR.

Authors:  Patrick C A van der Wel; Erik Strandberg; J Antoinette Killian; Roger E Koeppe
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

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