Literature DB >> 7524446

A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment.

R Devereux1, G W Mundfrom.   

Abstract

The divergence of 16S rDNA sequences in marine sediment was investigated. Twenty unique partial sequences were found among 33 cloned following PCR. Thirteen shared 82 to 91% similarity with sequences of delta subclass sulfate-reducing bacteria. Three contained the target sequence for a sulfate-reducing bacterium-specific oligonucleotide probe designed from pure-culture studies.

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Year:  1994        PMID： 7524446      PMCID： PMC201826          DOI： 10.1128/aem.60.9.3437-3439.1994

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

1.  Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms.

Authors:  R I Amann; J Stromley; R Devereux; R Key; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1992-02       Impact factor: 4.792

2.  16S rRNA sequences reveal numerous uncultured microorganisms in a natural community.

Authors:  D M Ward; R Weller; M M Bateson
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

3.  Rapid method for direct extraction of DNA from soil and sediments.

Authors:  Y L Tsai; B H Olson
Journal:  Appl Environ Microbiol       Date:  1991-04       Impact factor: 4.792

4.  Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

Authors:  D J Lane; B Pace; G J Olsen; D A Stahl; M L Sogin; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

5.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

6.  High diversity in DNA of soil bacteria.

Authors:  V Torsvik; J Goksøyr; F L Daae
Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

7.  Natural relationships among sulfate-reducing eubacteria.

Authors:  R Devereux; M Delaney; F Widdel; D A Stahl
Journal:  J Bacteriol       Date:  1989-12       Impact factor: 3.490

8.  Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats.

Authors:  A L Ruff-Roberts; J G Kuenen; D M Ward
Journal:  Appl Environ Microbiol       Date:  1994-02       Impact factor: 4.792

9.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

10.  Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology.

Authors:  D A Stahl; B Flesher; H R Mansfield; L Montgomery
Journal:  Appl Environ Microbiol       Date:  1988-05       Impact factor: 4.792
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  36 in total

1.  Molecular characterization of a toluene-degrading methanogenic consortium.

Authors:  M Ficker; K Krastel; S Orlicky; E Edwards
Journal:  Appl Environ Microbiol       Date:  1999-12       Impact factor: 4.792

2.  High bacterial diversity in permanently cold marine sediments.

Authors:  K Ravenschlag; K Sahm; J Pernthaler; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

3.  Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

Authors:  C Vetriani; H W Jannasch; B J MacGregor; D A Stahl; A L Reysenbach
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

4.  Prokaryotic diversity in Zostera noltii-colonized marine sediments.

Authors:  A Cifuentes; J Antón; S Benlloch; A Donnelly; R A Herbert; F Rodríguez-Valera
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

5.  Comparison of methods for quantification of cytochrome cd(1)-denitrifying bacteria in environmental marine samples.

Authors:  V Michotey; V Méjean; P Bonin
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

6.  Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude oil storage cavities.

Authors:  K Watanabe; K Watanabe; Y Kodama; K Syutsubo; S Harayama
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

7.  Whole-cell versus total RNA extraction for analysis of microbial community structure with 16S rRNA-targeted oligonucleotide probes in salt marsh sediments.

Authors:  M E Frischer; J M Danforth; M A Newton Healy; F M Saunders
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

8.  Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments.

Authors:  K Ravenschlag; K Sahm; C Knoblauch; B B Jørgensen; R Amann
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

9.  Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments.

Authors:  C Joulian; N B Ramsing; K Ingvorsen
Journal:  Appl Environ Microbiol       Date:  2001-07       Impact factor: 4.792

Review 10.  Search and discovery strategies for biotechnology: the paradigm shift.

Authors:  A T Bull; A C Ward; M Goodfellow
Journal:  Microbiol Mol Biol Rev       Date:  2000-09       Impact factor: 11.056
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