Literature DB >> 7524025

The Ribonuclease P database.

J W Brown1, E S Haas, D G Gilbert, N R Pace.   

Abstract

The Ribonuclease P Sequence database is a compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional models, and accessory information. In its initial form, the database contains information on RNase P RNA in bacteria and archaea, and RNase P protein in bacteria. The sequences themselves are presented phylogenetically ordered and aligned. The database also contains secondary structures of bacterial and archaeal RNAs, including specially annotated 'reference' secondary structures of Escherichia coli and Bacillus subtilis RNase P RNAs, a minimum phylogenetic consensus structure, and coordinates for models of three-dimensional structure.

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Year:  1994        PMID: 7524025      PMCID: PMC308337          DOI: 10.1093/nar/22.17.3660

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

Review 1.  The varieties of ribonuclease P.

Authors:  S C Darr; J W Brown; N R Pace
Journal:  Trends Biochem Sci       Date:  1992-05       Impact factor: 13.807

2.  Ribonuclease P RNA and protein subunits from bacteria.

Authors:  J W Brown; N R Pace
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

3.  Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.

Authors:  R R Gutell; A Power; G Z Hertz; E J Putz; G D Stormo
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

4.  Long-range structure in ribonuclease P RNA.

Authors:  E S Haas; D P Morse; J W Brown; F J Schmidt; N R Pace
Journal:  Science       Date:  1991-11-08       Impact factor: 47.728

5.  The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme.

Authors:  B D James; G J Olsen; J S Liu; N R Pace
Journal:  Cell       Date:  1988-01-15       Impact factor: 41.582

Review 6.  Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA--a review.

Authors:  N R Pace; D K Smith; G J Olsen; B D James
Journal:  Gene       Date:  1989-10-15       Impact factor: 3.688

7.  Structural conventions for group I introns.

Authors:  J M Burke; M Belfort; T R Cech; R W Davies; R J Schweyen; D A Shub; J W Szostak; H F Tabak
Journal:  Nucleic Acids Res       Date:  1987-09-25       Impact factor: 16.971

8.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

9.  Characterization of ribonuclease P RNAs from thermophilic bacteria.

Authors:  J W Brown; E S Haas; N R Pace
Journal:  Nucleic Acids Res       Date:  1993-02-11       Impact factor: 16.971

10.  Further perspective on the catalytic core and secondary structure of ribonuclease P RNA.

Authors:  E S Haas; J W Brown; C Pitulle; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-29       Impact factor: 11.205

  10 in total
  12 in total

1.  Different cleavage sites are aligned differently in the active site of M1 RNA, the catalytic subunit of Escherichia coli RNase P.

Authors:  J Kufel; L A Kirsebom
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

Review 2.  RNA structure and the regulation of gene expression.

Authors:  P Klaff; D Riesner; G Steger
Journal:  Plant Mol Biol       Date:  1996-10       Impact factor: 4.076

3.  Hybrid E. coli--Mitochondrial ribonuclease P RNAs are catalytically active.

Authors:  Elias Seif; Alexandre Cadieux; B Franz Lang
Journal:  RNA       Date:  2006-08-07       Impact factor: 4.942

4.  An important RNA tertiary interaction of group I and group II introns is implicated in gram-positive RNase P RNAs.

Authors:  M A Tanner; T R Cech
Journal:  RNA       Date:  1995-06       Impact factor: 4.942

5.  Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements.

Authors:  J W Brown; J M Nolan; E S Haas; M A Rubio; F Major; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-02       Impact factor: 11.205

6.  The Ribonuclease P Database.

Authors:  J W Brown
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

7.  In vitro selection for altered divalent metal specificity in the RNase P RNA.

Authors:  D N Frank; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

8.  The evolution of the RNase P- and RNase MRP-associated RNAs: phylogenetic analysis and nucleotide substitution rate.

Authors:  E Sbisà; G Pesole; A Tullo; C Saccone
Journal:  J Mol Evol       Date:  1996-07       Impact factor: 2.395

9.  Differentiation of Chlamydia spp. by sequence determination and restriction endonuclease cleavage of RNase P RNA genes.

Authors:  B Herrmann; O Winqvist; J G Mattsson; L A Kirsebom
Journal:  J Clin Microbiol       Date:  1996-08       Impact factor: 5.948

10.  Single-Molecule Fluorescence Reveals Commonalities and Distinctions among Natural and in Vitro-Selected RNA Tertiary Motifs in a Multistep Folding Pathway.

Authors:  Steve Bonilla; Charles Limouse; Namita Bisaria; Magdalena Gebala; Hideo Mabuchi; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2017-12-15       Impact factor: 15.419

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