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Literature DB >> 7524023

Database on the structure of large ribosomal subunit RNA.

P De Rijk¹, Y Van de Peer, S Chapelle, R De Wachter.

Abstract

A database on large ribosomal subunit RNA is made available. It contains 258 sequences. It provides sequence, alignment and secondary structure information in computer-readable formats. Files can be obtained using ftp.

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Year: 1994 PMID： 7524023 PMCID： PMC308310 DOI： 10.1093/nar/22.17.3495

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

10 in total

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Journal: Microbiol Rev Date: 1987-06

2. DCSE, an interactive tool for sequence alignment and secondary structure research.

Authors: P De Rijk; R De Wachter
Journal: Comput Appl Biosci Date: 1993-12

3. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors: N Saitou; M Nei
Journal: Mol Biol Evol Date: 1987-07 Impact factor: 16.240

Review 4. The winds of (evolutionary) change: breathing new life into microbiology.

Authors: G J Olsen; C R Woese; R Overbeek
Journal: J Bacteriol Date: 1994-01 Impact factor: 3.490

5. TREECON: a software package for the construction and drawing of evolutionary trees.

Authors: Y Van de Peer; R De Wachter
Journal: Comput Appl Biosci Date: 1993-04

6. Compilation of small ribosomal subunit RNA structures.

Authors: J M Neefs; Y Van de Peer; P De Rijk; S Chapelle; R De Wachter
Journal: Nucleic Acids Res Date: 1993-07-01 Impact factor: 16.971

7. GenBank.

Authors: D Benson; D J Lipman; J Ostell
Journal: Nucleic Acids Res Date: 1993-07-01 Impact factor: 16.971

8. The EMBL data library.

Authors: C M Rice; R Fuchs; D G Higgins; P J Stoehr; G N Cameron
Journal: Nucleic Acids Res Date: 1993-07-01 Impact factor: 16.971

9. Secondary structure of mouse 28S rRNA and general model for the folding of the large rRNA in eukaryotes.

Authors: B Michot; N Hassouna; J P Bachellerie
Journal: Nucleic Acids Res Date: 1984-05-25 Impact factor: 16.971

10. The primary and secondary structure of yeast 26S rRNA.

Authors: G M Veldman; J Klootwijk; V C de Regt; R J Planta; C Branlant; A Krol; J P Ebel
Journal: Nucleic Acids Res Date: 1981-12-21 Impact factor: 16.971

10 in total

22 in total

1. Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA.

Authors: J Wuyts; P De Rijk; Y Van de Peer; G Pison; P Rousseeuw; R De Wachter
Journal: Nucleic Acids Res Date: 2000-12-01 Impact factor: 16.971

2. Predicted secondary structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation.

Authors: Joseph J Gillespie; Matthew J Yoder; Robert A Wharton
Journal: J Mol Evol Date: 2005-07-14 Impact factor: 2.395

3. A quantitative map of nucleotide substitution rates in bacterial rRNA.

Authors: Y Van de Peer; S Chapelle; R De Wachter
Journal: Nucleic Acids Res Date: 1996-09-01 Impact factor: 16.971

4. Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria.

Authors: J F De Jonckheere; S Brown
Journal: Nucleic Acids Res Date: 1998-01-15 Impact factor: 16.971

5. Internal and external relationships of the Cnidaria: implications of primary and predicted secondary structure of the 5'-end of the 23S-like rDNA.

Authors: D M Odorico; D J Miller
Journal: Proc Biol Sci Date: 1997-01-22 Impact factor: 5.349

6. Large-subunit rRNA sequence of the chytridiomycete Blastocladiella emersonii, and implications for the evolution of zoosporic fungi.

Authors: G Van der Auwera; R De Wachter
Journal: J Mol Evol Date: 1996-11 Impact factor: 2.395