Literature DB >> 7510555

Unambiguous through-bond sugar-to-base correlations for purines in 13C,15N-labeled nucleic acids: the HsCsNb,HsCs(N)bCb, and HbNbCb experiments.

B T Farmer1, L Müller, E P Nikonowicz, A Pardi.   

Abstract

A set of three 3D (1H,13C,15N) triple-resonance correlation experiments has been designed to provide H1'-H8 intraresidue sugar-to-base correlations in purines in an unambiguous and efficient manner. Together, the HsCsNb, HsCs(N)bCb, and HbNbCb experiments correlate the H1' sugar proton to the H8 proton of the attached base by means of the (H1', C1', N9, C8, H8) heteronuclear scalar coupling network. The assignment strategy presented here allows for unambiguous H1'-H8 intraresidue correlations, provided that no two purines have both the same H1' and C1' chemical shifts and the same C8 and N9 chemical shifts. These experiments have yielded H1'-H8 intraresidue sugar-to-base correlations for all five guanosines in the [13C,15N] isotopically labeled RNA duplex r(GGCGCUUGCGUC)2.

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Year:  1994        PMID: 7510555     DOI: 10.1007/bf00178341

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  1 in total

1.  An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15N labeled nucleic acids.

Authors:  E P Nikonowicz; A Pardi
Journal:  J Mol Biol       Date:  1993-08-20       Impact factor: 5.469

  1 in total
  16 in total

1.  Redor in IS1S2 systems.

Authors:  J Leppert; B Heise; R Ramachandran
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

2.  Sugar-to-base correlation in nucleic acids with a 5D APSY-HCNCH or two 3D APSY-HCN experiments.

Authors:  Barbara Krähenbühl; Daniela Hofmann; Christophe Maris; Gerhard Wider
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

3.  Assignment methodology for larger RNA oligonucleotides: application to an ATP-binding RNA aptamer.

Authors:  T Dieckmann; J Feigon
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

4.  Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids.

Authors:  R Fiala; J Czernek; V Sklenár
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

5.  Assignment of aliphatic side-chain 1HN/15N resonances in perdeuterated proteins.

Authors:  B T Farmer; R A Venters
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

6.  MQ-hCN-based pulse sequences for the measurement of 13C1'-1H1', 13C1'-15N, 1H1'-15N, 13C1'-13C2', 1H1'-13C2',13C6/8-1H6/8, 13C6/8-15N, 1H6/8-15N, 13C6-13C5, 1H6-13C5 dipolar couplings in 13C, 15N-labeled DNA (and RNA).

Authors:  Jiangli Yan; Takeshi Corpora; Padmanava Pradhan; John H Bushweller
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

7.  Resolution-enhanced base-type-edited HCN experiment for RNA.

Authors:  Hélène Van Melckebeke; Arthur Pardi; Jérôme Boisbouvier; Jean-Pierre Simorre; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2005-08       Impact factor: 2.835

8.  The importance of a single G in the hairpin loop of the iron responsive element (IRE) in ferritin mRNA for structure: an NMR spectroscopy study.

Authors:  H Sierzputowska-Gracz; R A McKenzie; E C Theil
Journal:  Nucleic Acids Res       Date:  1995-01-11       Impact factor: 16.971

9.  Experiments for correlating quaternary carbons in RNA bases.

Authors:  Radovan Fiala; Markéta L Munzarová; Vladimír Sklenár
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

10.  Sequential assignments in uniformly 13C- and 15N-labelled RNAs: the HC(N,P) and HC(N,P)-CCH-TOCSY experiments.

Authors:  R Ramachandran; C Sich; M Grüne; V Soskic; L R Brown
Journal:  J Biomol NMR       Date:  1996-05       Impact factor: 2.835

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