Literature DB >> 7506529

The Escherichia coli cysG promoter belongs to the 'extended -10' class of bacterial promoters.

T Belyaeva1, L Griffiths, S Minchin, J Cole, S Busby.   

Abstract

The Escherichia coli cysG promoter has been subcloned and shown to function constitutively in a range of different growth conditions. Point mutations identify the -10 hexamer and an important 5'-TGN-3' motif immediately upstream. The effects of different deletions suggest that specific sequences in the -35 region are not essential for the activity of this promoter in vivo. This conclusion was confirmed by in vitro run-off transcription assays. The DNAase I footprint of RNA polymerase at the cysG promoter reveals extended protection upstream of the transcript start, and studies with potassium permanganate as a probe suggest that the upstream region is distorted in open complexes. Taken together, the results show that the cysG promoter belongs to the 'extended -10' class of promoters, and the base sequence is similar to that of the P1 promoter of the E. coli galactose operon, another promoter in this class. In vivo, messenger initiated at the cysG promoter appears to be processed by cleavage at a site 41 bases downstream from the transcript start point.

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Year:  1993        PMID: 7506529      PMCID: PMC1137772          DOI: 10.1042/bj2960851

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  24 in total

1.  Transcription initiation at the Escherichia coli galactose operon promoters in the absence of the normal -35 region sequences.

Authors:  S Ponnambalam; C Webster; A Bingham; S Busby
Journal:  J Biol Chem       Date:  1986-12-05       Impact factor: 5.157

2.  RNA polymerase makes important contacts upstream from base pair -49 at the Escherichia coli galactose operon P1 promoter.

Authors:  S Busby; A Spassky; B Chan
Journal:  Gene       Date:  1987       Impact factor: 3.688

3.  Constitutive function of a positively regulated promoter reveals new sequences essential for activity.

Authors:  S Keilty; M Rosenberg
Journal:  J Biol Chem       Date:  1987-05-05       Impact factor: 5.157

4.  Molecular cloning and functional analysis of the cysG and nirB genes of Escherichia coli K12, two closely-linked genes required for NADH-dependent nitrite reductase activity.

Authors:  H Macdonald; J Cole
Journal:  Mol Gen Genet       Date:  1985

Review 5.  Mechanism and control of transcription initiation in prokaryotes.

Authors:  W R McClure
Journal:  Annu Rev Biochem       Date:  1985       Impact factor: 23.643

6.  Binding of Escherichia coli RNA polymerase to a promoter carrying mutations that stop transcription initiation.

Authors:  F Johnston; S Ponnambalam; S Busby
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

7.  The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter.

Authors:  A Kumar; R A Malloch; N Fujita; D A Smillie; A Ishihama; R S Hayward
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

8.  Deletion mutagenesis of the Escherichia coli galactose operon promoter region.

Authors:  S Busby; D Kotlarz; H Buc
Journal:  J Mol Biol       Date:  1983-06-25       Impact factor: 5.469

9.  Nitrite and ammonia assimilation by anaerobic continuous cultures of Escherichia coli.

Authors:  J A Cole; K J Coleman; B E Compton; B M Kavanagh; C W Keevil
Journal:  J Gen Microbiol       Date:  1974-11

10.  On the action of the cyclic AMP-cyclic AMP receptor protein complex at the Escherichia coli lactose and galactose promoter regions.

Authors:  A Spassky; S Busby; H Buc
Journal:  EMBO J       Date:  1984-01       Impact factor: 11.598

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  17 in total

1.  Identification and analysis of 'extended -10' promoters in Escherichia coli.

Authors:  Jennie E Mitchell; Dongling Zheng; Stephen J W Busby; Stephen D Minchin
Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

2.  The strong efficiency of the Escherichia coli gapA P1 promoter depends on a complex combination of functional determinants.

Authors:  Benoit Thouvenot; Bruno Charpentier; Christiane Branlant
Journal:  Biochem J       Date:  2004-10-15       Impact factor: 3.857

3.  Temperature-dependence of open-complex formation at two Escherichia coli promoters with extended -10 sequences.

Authors:  H D Burns; T A Belyaeva; S J Busby; S D Minchin
Journal:  Biochem J       Date:  1996-07-01       Impact factor: 3.857

4.  Extended -10 motif is critical for activity of the cspA promoter but does not contribute to low-temperature transcription.

Authors:  Sangita Phadtare; Konstantin Severinov
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

5.  The N-terminal Domain of Escherichia coli Assimilatory NADPH-Sulfite Reductase Hemoprotein Is an Oligomerization Domain That Mediates Holoenzyme Assembly.

Authors:  Isabel Askenasy; Joseph M Pennington; Yeqing Tao; Alan G Marshall; Nicolas L Young; Weifeng Shang; M Elizabeth Stroupe
Journal:  J Biol Chem       Date:  2015-06-18       Impact factor: 5.157

6.  Identification and analysis of "extended -10" promoters from mycobacteria.

Authors:  M D Bashyam; A K Tyagi
Journal:  J Bacteriol       Date:  1998-05       Impact factor: 3.490

7.  Structure of open promoter complexes with Escherichia coli RNA polymerase as revealed by the DNase I footprinting technique: compilation analysis.

Authors:  O N Ozoline; M A Tsyganov
Journal:  Nucleic Acids Res       Date:  1995-11-25       Impact factor: 16.971

8.  Thermal energy requirement for strand separation during transcription initiation: the effect of supercoiling and extended protein DNA contacts.

Authors:  H Burns; S Minchin
Journal:  Nucleic Acids Res       Date:  1994-09-25       Impact factor: 16.971

9.  Non-canonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase.

Authors:  O N Ozoline; A A Deev; M V Arkhipova
Journal:  Nucleic Acids Res       Date:  1997-12-01       Impact factor: 16.971

10.  Regulatory architecture of the iron-regulated fepD-ybdA bidirectional promoter region in Escherichia coli.

Authors:  C A Christoffersen; T J Brickman; I Hook-Barnard; M A McIntosh
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

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