Literature DB >> 7443541

Chromatography on Sephadex LH20 as an efficient purification step after removal of internucleotide 2,2,2-trichloroethyl protective groups from oligoribonucleotide phosphotriesters.

K Grześkowiak, R W Adamiak, M Wiewiórowski.   

Abstract

Chromatography on Sephadex LH20, in a linear gradient of methanol in 0.02M TEAB buffer pH 7.5, is proposed as a fast and efficient method for the isolation and purification of protected oligoribonucleotide phosphodiesters obtained by deprotection of internucleotide phosphotriesters, and for the monitoring of the deprotection step itself. Its utility is shown on the example of removal of 2,2,2-trichloroethyl groups from oligoribonucleotide phosphotriester I of sequence CCCAUAA by two methods: /1/ reductive elimination with zinc in the presence of acetylacetone modified as presented here, and /2/ hydrogenolytic dehalogenation over palladium in pyridine. This method of chromatography on Sephadex LH20 is used as a key purification step during the removal of 2,2,2-trichloroethyl groups from I by method /1/ and allows to raise the yield of III during fianl deprotection step from 5 to 65%.

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Year:  1980        PMID: 7443541      PMCID: PMC323975          DOI: 10.1093/nar/8.5.1097

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  Nucleoside 3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. IV. New method for removal of 2,2,2-trichloroethyl group and 31P NMR as a new tool for analysis of deblocking of internucleotide phosphate protecting groups.

Authors:  R W Adamiak; E Biala; R Kierzek; A Kraszewski; W T Markiewicz; J Stawiński
Journal:  Nucleic Acids Res       Date:  1977-07       Impact factor: 16.971

2.  Neighbouring group participation in the unblocking of phosphotriesters of nucleic acids.

Authors:  J F de Rooij; G Wille-Hazeleger; P M Burgers; J H van Boom
Journal:  Nucleic Acids Res       Date:  1979       Impact factor: 16.971

3.  Deoxy oligonucleotide synthesis via the triester method.

Authors:  J C Catlin; F Cramer
Journal:  J Org Chem       Date:  1973-01-26       Impact factor: 4.354

4.  Sites and thermodynamic quantities associated with proton and metal ion interaction with ribonucleic acid, deoxyribonucleic acid, and their constituent bases, nucleosides, and nucleotides.

Authors:  R M Izatt; J J Christensen; J H Rytting
Journal:  Chem Rev       Date:  1971-10       Impact factor: 60.622

5.  The phosphotriester approach to oligonucleotide synthesis: Preparation of oligo- and poly-thymidylic acids.

Authors:  R Arentzen; C B Reese
Journal:  J Chem Soc Perkin 1       Date:  1977

6.  Studies on transfer ribonucleic acids and related compounds. VI. Synthesis of yeast alanine transfer ribonucleic acid 3'-terminal nonanucleotides and 5'-terminal hexanucleotides.

Authors:  E Otsuka; M Ubasawa; S Morioka; M Ikehara
Journal:  J Am Chem Soc       Date:  1973-07-11       Impact factor: 15.419

7.  The chemical synthesis of the anticodon loop of an eukaryotic initiator tRNA containing the hypermodified nucleoside N6-/N-threonylcarbonyl/-adenosine/t6A/1.

Authors:  R W Adamiak; E Biała; K Grześkowiak; R Kierzek; A Kraszewski; W T Markiewicz; J Okupniak; J Stawiński; M Wiewiórowski
Journal:  Nucleic Acids Res       Date:  1978-06       Impact factor: 16.971

  7 in total
  2 in total

1.  Total Synthesis of the Complete Protective Antigen of Vibrio cholerae O139.

Authors:  Sameh E Soliman; Pavol Kováč
Journal:  Angew Chem Int Ed Engl       Date:  2016-09-14       Impact factor: 15.336

2.  Hot start PCR with heat-activatable primers: a novel approach for improved PCR performance.

Authors:  Alexandre V Lebedev; Natasha Paul; Joyclyn Yee; Victor A Timoshchuk; Jonathan Shum; Kei Miyagi; Jack Kellum; Richard I Hogrefe; Gerald Zon
Journal:  Nucleic Acids Res       Date:  2008-09-16       Impact factor: 16.971

  2 in total

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