Literature DB >> 673839

The chemical synthesis of the anticodon loop of an eukaryotic initiator tRNA containing the hypermodified nucleoside N6-/N-threonylcarbonyl/-adenosine/t6A/1.

R W Adamiak, E Biała, K Grześkowiak, R Kierzek, A Kraszewski, W T Markiewicz, J Okupniak, J Stawiński, M Wiewiórowski.   

Abstract

In this work, the first example of chemical synthesis of oligoribonucleotide containing the hypermodified nucleoside N6-/N-threonylcarbonyl/-adenosine /t6A/ is presented. Synthesis of the heptamer C-C-C-A-U-t6A-A IX, the sequence of which is related to the anticodon loop of the initiator tRNA from yellow lupine, was achieved by: /i/ phosphotriester block synthesis of suitably protected heptamer VI containing an adenosine unit with a free exo-NH2 group, /ii/ highly effective "one-flask" procedure for the transformation of the free exo-NH2 group of adenosine unit of heptamer VI into a N,N'-disubstituted urea system of t6A of heptamer VII /hypermodification/, and /iii/ final deprotection of VIII /32% total yield/ with the use of a new approach for simultaneous hydrogenolysis /PdO-hydrogen-pyridine/ of the p-nitrobenzyl group and 2,2,2-trichloroethyl groups from carboxyl function of t6A and internucleotide phosphates respectively.

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Year:  1978        PMID: 673839      PMCID: PMC342132          DOI: 10.1093/nar/5.6.1889

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  Synthesis of thymidine oligonucleotides by phosphite triester intermediates.

Authors:  R L Letsinger; W B Lunsford
Journal:  J Am Chem Soc       Date:  1976-06-09       Impact factor: 15.419

2.  Studies on transfer ribonucleic acids and related compounds. X. synthesis of the yeast tyrosine tRNA 5'-terminal oligonucleotides.

Authors:  E Ohtsuka; K Fujiyama; M Ohashi; M Ikehara
Journal:  Chem Pharm Bull (Tokyo)       Date:  1976-04       Impact factor: 1.645

3.  Nucleoside 3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. IV. New method for removal of 2,2,2-trichloroethyl group and 31P NMR as a new tool for analysis of deblocking of internucleotide phosphate protecting groups.

Authors:  R W Adamiak; E Biala; R Kierzek; A Kraszewski; W T Markiewicz; J Stawiński
Journal:  Nucleic Acids Res       Date:  1977-07       Impact factor: 16.971

4.  Synthesis of oligoribonucleotides.

Authors:  K K Ogilvie; N Theriault; K L Sadana
Journal:  J Am Chem Soc       Date:  1977-11-09       Impact factor: 15.419

5.  Synthesis of oligonucleotides with sequences identical with or analogous to the 3'-end of 16S ribosomal RNA of Escherichia coli: preparation of m-6-2-A-C-C-U-C-C and A-C-C-U-C-m-4-2C via phosphotriester intermediates.

Authors:  J H van Boom; P M Burgers; G van der Marel; G Wille
Journal:  Nucleic Acids Res       Date:  1977-03       Impact factor: 16.971

6.  Synthesis of the anticodon loop of Escherichia coli methionine transfer ribonucleic acid.

Authors:  T Neilson; E S Werstink
Journal:  J Am Chem Soc       Date:  1974-04-03       Impact factor: 15.419

7.  Determination of N-(9-( -D-ribofuranosyl)purin-6-ylcarbamoly)threonine at the picomole level in transfer-RNA.

Authors:  J P Miller; M P Schweizer
Journal:  Anal Biochem       Date:  1972-12       Impact factor: 3.365

8.  Deoxy oligonucleotide synthesis via the triester method.

Authors:  J C Catlin; F Cramer
Journal:  J Org Chem       Date:  1973-01-26       Impact factor: 4.354

9.  Nucleoside-3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. III. An improved preparation of nucleoside 3'-phosphotriesters, their 1H NMR characterization and new conditions for removal of 2-cyanoethyl group.

Authors:  R W Adamiak; M Z Barciszewska; E Biala; K Grzéskowiak; R Kierzek; A Kraszewski; W T Markiewicz; M Wiewiórowski
Journal:  Nucleic Acids Res       Date:  1976-12       Impact factor: 16.971

10.  Studies on transfer ribonucleic acids and related compounds. VI. Synthesis of yeast alanine transfer ribonucleic acid 3'-terminal nonanucleotides and 5'-terminal hexanucleotides.

Authors:  E Otsuka; M Ubasawa; S Morioka; M Ikehara
Journal:  J Am Chem Soc       Date:  1973-07-11       Impact factor: 15.419

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  5 in total

1.  The chemical synthesis of oligoribonucleotides VII. A comparison of condensing agents in the coupling of silylated ribonucleosides.

Authors:  K K Ogilvie; R T Pon
Journal:  Nucleic Acids Res       Date:  1980-05-10       Impact factor: 16.971

2.  Chromatography on Sephadex LH20 as an efficient purification step after removal of internucleotide 2,2,2-trichloroethyl protective groups from oligoribonucleotide phosphotriesters.

Authors:  K Grześkowiak; R W Adamiak; M Wiewiórowski
Journal:  Nucleic Acids Res       Date:  1980-03-11       Impact factor: 16.971

3.  A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

Authors:  Kenjyo Miyauchi; Satoshi Kimura; Tsutomu Suzuki
Journal:  Nat Chem Biol       Date:  2012-12-16       Impact factor: 15.040

4.  The synthesis of oligoribonucleotides containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines via post-synthetic modification of precursor oligomers.

Authors:  Elzbieta Kierzek; Ryszard Kierzek
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

5.  Efficient access to 3'-O-phosphoramidite derivatives of tRNA related N 6-threonylcarbamoyladenosine (t6A) and 2-methylthio-N 6-threonylcarbamoyladenosine (ms2t6A).

Authors:  Katarzyna Debiec; Elzbieta Sochacka
Journal:  RSC Adv       Date:  2021-01-07       Impact factor: 3.361

  5 in total

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