Literature DB >> 7433114

Some rules in the ordering of nucleotides in the DNA.

R Nussinov.   

Abstract

Natural DNA sequences contain distinct nearest neighbor patterns. Eukaryotic as well as prokaryotic sequences show a consistent hierarchy in the frequencies of appearance of most doublets.

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Year:  1980        PMID： 7433114      PMCID： PMC324258          DOI： 10.1093/nar/8.19.4545

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  47 in total

1.  Nucleotide sequence of an insertion element, IS1.

Authors:  H Ohtsubo; E Ohtsubo
Journal:  Proc Natl Acad Sci U S A       Date:  1978-02       Impact factor: 11.205

2.  Nucleotide sequence and amplification in bacteria of structural gene for rat growth hormone.

Authors:  P H Seeburg; J Shine; J A Martial; J D Baxter; H M Goodman
Journal:  Nature       Date:  1977-12-08       Impact factor: 49.962

3.  Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein.

Authors:  W Min Jou; G Haegeman; M Ysebaert; W Fiers
Journal:  Nature       Date:  1972-05-12       Impact factor: 49.962

4.  An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.

Authors:  H Subak-Sharpe; R R Bürk; L V Crawford; J M Morrison; J Hay; H M Keir
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1966

5.  The primary structure of rabbit beta-globin mRNA as determined from cloned DNA.

Authors:  A Efstratiadis; F C Kafatos; T Maniatis
Journal:  Cell       Date:  1977-04       Impact factor: 41.582

6.  A-protein gene of bacteriophage MS2.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegmean; J Merregaert; W M Jou; A Raeymakers; G Volckaert; M Ysebaert; J Van de Kerckhove; F Nolf; M Van Montagu
Journal:  Nature       Date:  1975-07-24       Impact factor: 49.962

7.  Construction and analysis of recombinant DNA for human chorionic somatomammotropin.

Authors:  J Shine; P H Seeburg; J A Martial; J D Baxter; H M Goodman
Journal:  Nature       Date:  1977-12-08       Impact factor: 49.962

8.  Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegeman; D Iserentant; J Merregaert; W Min Jou; F Molemans; A Raeymaekers; A Van den Berghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1976-04-08       Impact factor: 49.962

9.  Rat insulin genes: construction of plasmids containing the coding sequences.

Authors:  A Ullrich; J Shine; J Chirgwin; R Pictet; E Tischer; W J Rutter; H M Goodman
Journal:  Science       Date:  1977-06-17       Impact factor: 47.728

10.  Nucleotide sequence of cro, cII and part of the O gene in phage lambda DNA.

Authors:  E Schwarz; G Scherer; G Hobom; H Kössel
Journal:  Nature       Date:  1978-03-30       Impact factor: 49.962
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  32 in total

Review 1.  SWORDS: a statistical tool for analysing large DNA sequences.

Authors:  Probal Chaudhuri; Sandip Das
Journal:  J Biosci       Date:  2002-02       Impact factor: 1.826

2.  Comparison of dinucleotide frequency and codon usage in Toxoplasma and Plasmodium: evolutionary implications.

Authors:  A M Johnson
Journal:  J Mol Evol       Date:  1990-04       Impact factor: 2.395

3.  Distinct patterns in the dinucleotide nearest neighbors to G/C and A/T oligomers in eukaryotic sequences.

Authors:  R Nussinov
Journal:  J Mol Evol       Date:  1991-09       Impact factor: 2.395

4.  Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes.

Authors:  N Chaubet; G Philipps; M E Chaboute; M Ehling; C Gigot
Journal:  Plant Mol Biol       Date:  1986-07       Impact factor: 4.076

5.  On concerted origin of transfer RNAs with complementary anticodons.

Authors:  S Rodin; S Ohno; A Rodin
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

6.  Variation in G + C-content and codon choice: differences among synonymous codon groups in vertebrate genes.

Authors:  A Marín; J Bertranpetit; J L Oliver; J R Medina
Journal:  Nucleic Acids Res       Date:  1989-08-11       Impact factor: 16.971

7.  Compositional constraints and genome evolution.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

8.  Sequence similarity ('homology') searching for molecular biologists.

Authors:  D Davison
Journal:  Bull Math Biol       Date:  1985       Impact factor: 1.758

9.  Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: early and late signaling on genome evolution?

Authors:  V Kirzhner; A Paz; Z Volkovich; E Nevo; A Korol
Journal:  J Mol Evol       Date:  2007-03-19       Impact factor: 2.395

10.  Mono- through hexanucleotide composition of the Escherichia coli genome: a Markov chain analysis.

Authors:  G J Phillips; J Arnold; R Ivarie
Journal:  Nucleic Acids Res       Date:  1987-03-25       Impact factor: 16.971
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