Literature DB >> 7353039

Structural study of the heme crevice in cytochrome b5 based on individual assignments of the 1H-NMR lines of the heme group and selected amino acid residues.

R M Keller, K Wüthrich.   

Abstract

Measurements of saturation transfer, spin-decoupling and truncated-driven nuclear Overhauser effect difference spectra were applied to indidually assign the 1H-NMR lines of the heme group and nearby amino acid residues in reduced and oxidized cytochrome b5. These data imply that the orientation of the heme group in the major cytochrome b5 conformation in solution differs from that reported for the X-ray crystal structure by a 180 degree rotation about an axis through the meso-carbon atoms alpha and gamma. Otherwise comparison of the experimental chemical shifts with those obtained from ring current calculations using the refined X-ray atomic coordinates provide no evidence that the polypeptide conformation near the heme is different in the crystals and in solution. It seems quite likely that the previously described second solution conformation of cytochrome b5 is related to the major species through a different orientation of the heme.

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Year:  1980        PMID: 7353039     DOI: 10.1016/0005-2795(80)90172-5

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  10 in total

1.  Cloning, expression, purification, and preliminary characterization of a putative hemoglobin from the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  N L Scott; J T Lecomte
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

Review 2.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

3.  1H-n.m.r. investigation of the interaction between cytochrome c and cytochrome b5.

Authors:  C G Eley; G R Moore
Journal:  Biochem J       Date:  1983-10-01       Impact factor: 3.857

4.  Analysis of the paramagnetic shifts of haem carbon resonances in bovine ferricytochrome b5.

Authors:  R Pierattelli; D L Turner
Journal:  Eur Biophys J       Date:  1996       Impact factor: 1.733

5.  The orientations of cytochrome c in the highly dynamic complex with cytochrome b5 visualized by NMR and docking using HADDOCK.

Authors:  Alexander N Volkov; Davide Ferrari; Jonathan A R Worrall; Alexandre M J J Bonvin; Marcellus Ubbink
Journal:  Protein Sci       Date:  2005-02-02       Impact factor: 6.725

6.  Solution 1H NMR characterization of the axial bonding of the two His in oxidized human cytoglobin.

Authors:  Vasyl Bondarenko; Sylvia Dewilde; Luc Moens; Gerd N La Mar
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

7.  Ligand accessibility to heme cytochrome b5 coordinating sphere and enzymatic activity enhancement upon tyrosine ionization.

Authors:  Alejandro K Samhan-Arias; Cristina M Cordas; Marta S Carepo; Luisa B Maia; Carlos Gutierrez-Merino; Isabel Moura; José J G Moura
Journal:  J Biol Inorg Chem       Date:  2019-03-05       Impact factor: 3.358

8.  The comparative study on the solution structures of the oxidized bovine microsomal cytochrome b5 and mutant V45H.

Authors:  Qi Zhang; Chunyang Cao; Zhi-Qiang Wang; Yun-Hua Wang; Houming Wu; Zhong-Xian Huang
Journal:  Protein Sci       Date:  2004-08       Impact factor: 6.725

9.  Transmutation of a heme protein.

Authors:  P D Barker; J C Ferrer; M Mylrajan; T M Loehr; R Feng; Y Konishi; W D Funk; R T MacGillivray; A G Mauk
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-15       Impact factor: 11.205

10.  Comparison of the 1.85 A structure of CYP154A1 from Streptomyces coelicolor A3(2) with the closely related CYP154C1 and CYPs from antibiotic biosynthetic pathways.

Authors:  Larissa M Podust; Horacio Bach; Youngchang Kim; David C Lamb; Miharu Arase; David H Sherman; Steven L Kelly; Michael R Waterman
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

  10 in total

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