Literature DB >> 7334528

The current status of REH theory.

R Holmquist, T H Jukes.   

Abstract

The recent evaluation by Fitch (1980) of REH theory for macromolecular divergence is a severely erroneous and distorted analysis of our work over the past decade. We reply to those distortions here. At present, there is no factual basis for believing Fitch's assessment that corrections which move evolutionary estimates of total mutations fixed closer to the true distance must do so at the expense of an increased variance sufficient to compromise the value of the improvement. By direct calculation the variance in the estimates of total mutations fixed given by REH theory is comparable to that of other models now in the literature for the case in which genetic events are equiprobable. A general argument is given that suggests that, as we consider more and more carefully the selective, functional, and structural constraints on the evolution of genes and proteins, this variance may be expected to decrease toward a lower bound.

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Year:  1981        PMID: 7334528     DOI: 10.1007/bf01733211

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  32 in total

1.  AMINO-ACID SEQUENCE INVESTIGATIONS OF FIBRINOPEPTIDES FROM VARIOUS MAMMALS: EVOLUTIONARY IMPLICATIONS.

Authors:  R F DOOLITTLE; B BLOMBAECK
Journal:  Nature       Date:  1964-04-11       Impact factor: 49.962

2.  The covarion model for the evolution of proteins: parameter estimates and comparison with Holmquist, Cantor, and Jukes' stochastic model.

Authors:  J M Karon
Journal:  J Mol Evol       Date:  1979-03-15       Impact factor: 2.395

3.  Multidimensional scaling, tree-fitting, and clustering.

Authors:  R N Shepard
Journal:  Science       Date:  1980-10-24       Impact factor: 47.728

4.  Stochastic versus augmented maximum parsimony method for estimating superimposed mutations in the divergent evolution of protein sequences. Methods tested on cytochrome c amino acid sequences.

Authors:  G W Moore; M Goodman; C Callahan; R Holmquist; H Moise
Journal:  J Mol Biol       Date:  1976-07-25       Impact factor: 5.469

Review 5.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

6.  The method of parsimony: an experimental test and theoretical analysis of the adequacy of molecular restoration studies.

Authors:  R Holmquist
Journal:  J Mol Biol       Date:  1979-12-25       Impact factor: 5.469

7.  Does the information density of amino acid composition increase?

Authors:  J L King
Journal:  J Mol Evol       Date:  1980-03       Impact factor: 2.395

8.  Nonrandom amino acid substitution and estimation of the number of nucleotide substitutions in evolution.

Authors:  M Nei; Y Tateno
Journal:  J Mol Evol       Date:  1978-10-06       Impact factor: 2.395

9.  Antigenic drift between the haemagglutinin of the Hong Kong influenza strains A/Aichi/2/68 and A/Victoria/3/75.

Authors:  M Verhoeyen; R Fang; W M Jou; R Devos; D Huylebroeck; E Saman; W Fiers
Journal:  Nature       Date:  1980-08-21       Impact factor: 49.962

10.  Evolutionary analysis of alpha and beta hemoglobin genes by REH theory under the assumption of the equiprobability of genetic events.

Authors:  R Holmquist
Journal:  J Mol Evol       Date:  1980-05       Impact factor: 2.395

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  3 in total

1.  Accumulation pattern of amino acid substitutions in protein evolution.

Authors:  T Kunisawa; K Horimoto; J Otsuka
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

2.  Progressive sequence alignment as a prerequisite to correct phylogenetic trees.

Authors:  D F Feng; R F Doolittle
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

3.  The old REH theory remains unsatisfactory and the new REH theory is problematical - a reply to Holmquist and Jukes.

Authors:  W M Fitch
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

  3 in total

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