Literature DB >> 7301587

The transitions between left- and right-handed forms of poly(dG-dC).

V I Ivanov, E E Minyat.   

Abstract

The circular dichroism study of water/trifluoroethanol (TFE) solutions of poly(dG-dC) has revealed the following: The polynucleotide is present as a B form up to a TFE content of 60% (v/v) or less. Then, a cooperative transition into a left-handed Z form occurs. Within the region of 66-78% TFE, a continuous non-cooperative change is going on which can be attributed to an intrafamily transition within the family of Z forms. At last, in the interval of 80-84% TFE, a second cooperative transition, probably, Z - A is realized. Both transitions, Z - A and Z - B, show slow kinetics (10-60 min) while the direct transitions from the A to B form taking less than 10 sec. The length of cooperativity for the B - Z transition, Vo = 25 base pairs was estimated using spermine molecules. Spermine was found to induce the B to Z transition in the (dG-dC) sequences even in the absence of TFE which might be biologically interesting.

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Year:  1981        PMID: 7301587      PMCID: PMC327475          DOI: 10.1093/nar/9.18.4783

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  The nature of the B-A transition of DNA in solution.

Authors:  G Malenkov; L Minchenkova; E Minyat; A Schyolkina; V Ivanov
Journal:  FEBS Lett       Date:  1975-03-01       Impact factor: 4.124

2.  Conformational fluctuations of DNA helix.

Authors:  D E Depew; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1975-11       Impact factor: 11.205

3.  Polymorphism of a synthetic DNA in solution.

Authors:  F M Pohl
Journal:  Nature       Date:  1976-03-25       Impact factor: 49.962

Review 4.  Conformational changes in DNA molecules.

Authors:  M D Frank-Kamenetskii; Y S Lazurkin
Journal:  Annu Rev Biophys Bioeng       Date:  1974

5.  Conformation and reactivity of DNA. VI. Circular dichroism studies of salt-induced conformational changes of DNAs of different base composition.

Authors:  C Zimmer; G Luck
Journal:  Biochim Biophys Acta       Date:  1974-08-15

Review 6.  The geometry of nucleic acids.

Authors:  S Arnott
Journal:  Prog Biophys Mol Biol       Date:  1970       Impact factor: 3.667

7.  Effect of detergents on photoinduced changes of absorption of Chromatium minutissimum chromatophores.

Authors:  N V Karapetyan; I N Krakhmaleva; A A Krasnovskii
Journal:  Mol Biol       Date:  1972 Sep-Oct       Impact factor: 1.374

8.  Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism.

Authors:  V I Ivanov; L E Minchenkova; A K Schyolkina; A I Poletayev
Journal:  Biopolymers       Date:  1973       Impact factor: 2.505

9.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

10.  Left-handed deoxyribonucleic acid double helix in solution.

Authors:  C K Mitra; M H Sarma; R H Sarma
Journal:  Biochemistry       Date:  1981-03-31       Impact factor: 3.162

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  21 in total

1.  Thermodynamics of the B to Z transition in poly(m5dG-dC).

Authors:  J B Chaires; J M Sturtevant
Journal:  Proc Natl Acad Sci U S A       Date:  1986-08       Impact factor: 11.205

2.  Conformation of the synthetic DNA poly(amino2dA-dT) duplex in high-salt and aqueous alcohol solutions.

Authors:  M Vorlícková; J Sági; A Szabolcs; A Szemzö; L Otvös; J Kypr
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

3.  Statistical mechanics of the B----Z transition of DNA: contribution of diffuse ionic interactions.

Authors:  D M Soumpasis
Journal:  Proc Natl Acad Sci U S A       Date:  1984-08       Impact factor: 11.205

4.  New DNA polymorphism: evidence for a low salt, left-handed form of poly(dG-m5dC).

Authors:  B G Feuerstein; L J Marton; M A Keniry; D L Wade; R H Shafer
Journal:  Nucleic Acids Res       Date:  1985-06-11       Impact factor: 16.971

5.  Right-handed and left-handed helices of poly(dA-dC) X (dG-dT).

Authors:  J A Taboury; E Taillandier
Journal:  Nucleic Acids Res       Date:  1985-06-25       Impact factor: 16.971

6.  A Z-like form of poly(dA-dC).poly(dG-dT) in solution?

Authors:  M Vorlíckovă; J Kypr; S Stokrová; J Sponar
Journal:  Nucleic Acids Res       Date:  1982-02-11       Impact factor: 16.971

7.  Conformational transitions of poly(dA-dC).poly(dG-dT) induced by high salt or in ethanolic solution.

Authors:  C Zimmer; S Tymen; C Marck; W Guschlbauer
Journal:  Nucleic Acids Res       Date:  1982-02-11       Impact factor: 16.971

8.  Zinc Z-DNA.

Authors:  G V Fazakerley
Journal:  Nucleic Acids Res       Date:  1984-04-25       Impact factor: 16.971

9.  Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy.

Authors:  Alexander Y Lushnikov; Bernard A Brown; Elena A Oussatcheva; Vladimir N Potaman; Richard R Sinden; Yuri L Lyubchenko
Journal:  Nucleic Acids Res       Date:  2004-09-01       Impact factor: 16.971

10.  Intercalative and nonintercalative binding of large cationic porphyrin ligands to polynucleotides.

Authors:  M J Carvlin; E Mark; R Fiel; J C Howard
Journal:  Nucleic Acids Res       Date:  1983-09-10       Impact factor: 16.971

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