Literature DB >> 7217074

First observation of amino acid side chain dynamics in membrane proteins using high field deuterium nuclear magnetic resonance spectroscopy.

R A Kinsey, A Kintanar, M D Tsai, R L Smith, N Janes, E Oldfield.   

Abstract

We have obtained the first deuterium NMR spectra of an individual membrane protein, bacteriorhodopsin in the purple membrane of Halobacterium halobium R1. Biosynthetic isotopic enrichment with [gamma-2H6]valine and high field Fourier transform operation permitted rapid data acquisition on intact membranes, including measurement of relaxation times. At some temperatures high quality spectra could be obtained in less than 1 s. [U-14C]Valine tracer studies indicate that less than or equal to 2% of valine added to the growth medium is broken down and incorporated into other membrane constituents. The NMR results indicate that the valine side chain is a rather rigid structure. Motion about C alpha-C beta is slow (less than 10(5) s-1) at growth temperature, While motion about C beta-C gamma is as expected fast (much greater than 10(5) s-1) at all accessible temperatures. The activation energy for methyl group rotation from spin-lattice relaxation data between -75 and 53 degrees C is approximately 2.4 kcal/mol, in good agreement with previous 1H NMR studies on solid alkanes. Preliminary data on [gamma-2H6]valine-labeled Acholeplasma laidlawii B (PG9) cell membranes are also presented. Our results strongly suggest that it should now be possible to observe in great detail the motions of any type of amino acid side chain in membrane proteins, including the effects of lipid composition on protein dynamics.

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Year:  1981        PMID: 7217074

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  15 in total

Review 1.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
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Review 2.  NMR studies of retinal proteins.

Authors:  L Zheng; J Herzfeld
Journal:  J Bioenerg Biomembr       Date:  1992-04       Impact factor: 2.945

3.  Probing the structure of membrane proteins with electron spin echo envelope modulation spectroscopy.

Authors:  Daniel Mayo; Andy Zhou; Indra Sahu; Robert McCarrick; Parker Walton; Adam Ring; Kaylee Troxel; Aaron Coey; Jaclyn Hawn; Abdul-Hamid Emwas; Gary A Lorigan
Journal:  Protein Sci       Date:  2011-06-02       Impact factor: 6.725

4.  Dynamics of the three methionyl side chains of Streptomyces subtilisin inhibitor. Deuterium NMR studies in solution and in the solid state.

Authors:  A Tamura; M Matsushita; A Naito; S Kojima; K I Miura; K Akasaka
Journal:  Protein Sci       Date:  1996-01       Impact factor: 6.725

Review 5.  Hydrogen bonded chain mechanisms for proton conduction and proton pumping.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  J Membr Biol       Date:  1983       Impact factor: 1.843

6.  Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example.

Authors:  Mei Hong; Tatiana V Mishanina; Sarah D Cady
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

7.  2H NMR determination of the global correlation time of the gramicidin channel in a lipid bilayer.

Authors:  K C Lee; W Hu; T A Cross
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

Review 8.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

9.  Dynamic properties of the backbone of an integral membrane polypeptide measured by 2H-NMR.

Authors:  K P Pauls; A L MacKay; O Söderman; M Bloom; A K Tanjea; R S Hodges
Journal:  Eur Biophys J       Date:  1985       Impact factor: 1.733

10.  Effects of amantadine on the dynamics of membrane-bound influenza A M2 transmembrane peptide studied by NMR relaxation.

Authors:  Sarah D Cady; Mei Hong
Journal:  J Biomol NMR       Date:  2009-07-25       Impact factor: 2.835

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