Literature DB >> 7171709

Fluorescence energy transfer in two dimensions. A numeric solution for random and nonrandom distributions.

B Snyder, E Freire.   

Abstract

A method of Monte Carlo calculations has been applied to the problem of fluorescence energy transfer in two dimensions in order to provide a quantitative measure of the effects of nonideal mixing of lipid and protein molecules on the quenching profiles of membrane systems. These numerical techniques permit the formulation of a detailed set of equations that describes in a precise manner the quenching and depolarization properties of planar donor-acceptor distributions as a function of specific spectroscopic and organizational parameters. Because of the exact nature of the present numeric method, these results are used to evaluate critically the validity of previous approximate treatments existing in the literature. This method is also used to examine the effects of excluded volume interactions and distinct lattice structures on the expected transfer efficiencies. As a specific application, representative quenching profiles for protein-lipid mixtures, in which donor groups are covalently linked to the protein molecules and acceptor species are randomly distributed within lipid domains, have been obtained. It is found that the existence of phase-separated protein domains gives rise to a shielding effect that significantly decreases the transfer efficiencies with respect to those expected for an ideal distribution of protein molecules. The results from the present numerical study indicate that the experimental application of fluorescence energy transfer measurements in multicomponent membrane systems can be used to obtain organizational parameters that accurately reflect the lateral distribution of protein and lipid molecules within the bilayer membrane.

Entities:  

Mesh:

Year:  1982        PMID: 7171709      PMCID: PMC1328986          DOI: 10.1016/S0006-3495(82)84468-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

Review 1.  Fluorescence energy transfer as a spectroscopic ruler.

Authors:  L Stryer
Journal:  Annu Rev Biochem       Date:  1978       Impact factor: 23.643

2.  On the theory of trapping of excitation in the photosynthetic unit.

Authors:  R S Knox
Journal:  J Theor Biol       Date:  1968-11       Impact factor: 2.691

3.  Intramembrane positions of membrane-bound chromophores determined by excitation energy transfer.

Authors:  D E Koppel; P J Fleming; P Strittmatter
Journal:  Biochemistry       Date:  1979-11-27       Impact factor: 3.162

4.  The dimeric nature of the gramicidin A transmembrane channel: conductance and fluorescence energy transfer studies of hybrid channels.

Authors:  W Veatch; L Stryer
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

5.  Structural mapping of aspartate transcarbamoylase by fluorescence energy-transfer measurements: determination of the distance between catalytic sites of different subunits.

Authors:  L H Hahn; G G Hammes
Journal:  Biochemistry       Date:  1978-06-13       Impact factor: 3.162

6.  Surface density determination in membranes by fluorescence energy transfer.

Authors:  B K Fung; L Stryer
Journal:  Biochemistry       Date:  1978-11-28       Impact factor: 3.162

7.  Cooperative effects in binding by bovine serum albumin. II. The binding of 1-anilino-8-naphthalenesulfonate. Polarization of the ligand fluorescence and quenching of the protein fluorescence.

Authors:  G Weber; E Daniel
Journal:  Biochemistry       Date:  1966-06       Impact factor: 3.162

8.  Segregation of chlorophyll a incorporated into lipid bilayers.

Authors:  A G Lee
Journal:  Biochemistry       Date:  1975-10-07       Impact factor: 3.162

9.  Fluorescence labeling of the human erythrocyte anion transport system.

Authors:  S Dissing; A J Jesaitis; P A Fortes
Journal:  Biochim Biophys Acta       Date:  1979-05-03

10.  The organisation of cholesterol and ergosterol in lipid bilayers based on studies using non-perturbing fluorescent sterol probes.

Authors:  J Rogers; A G Lee; D C Wilton
Journal:  Biochim Biophys Acta       Date:  1979-03-23
View more
  33 in total

Review 1.  DNA probes using fluorescence resonance energy transfer (FRET): designs and applications.

Authors:  V V Didenko
Journal:  Biotechniques       Date:  2001-11       Impact factor: 1.993

2.  Comparison between whole distribution- and average-based approaches to the determination of fluorescence resonance energy transfer efficiency in ensembles of proteins in living cells.

Authors:  Deo R Singh; Valerică Raicu
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Taking care of bystander FRET in a crowded cell membrane environment.

Authors:  Andrew H A Clayton; Amitabha Chattopadhyay
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

4.  A flexible approach to the calculation of resonance energy transfer efficiency between multiple donors and acceptors in complex geometries.

Authors:  Ben Corry; Dylan Jayatilaka; Paul Rigby
Journal:  Biophys J       Date:  2005-09-30       Impact factor: 4.033

5.  Non-uniform membrane probe distribution in resonance energy transfer: application to protein-lipid selectivity.

Authors:  Ricardo C Capeta; José A Poveda; Luís M S Loura
Journal:  J Fluoresc       Date:  2006-03-11       Impact factor: 2.217

6.  The FRET signatures of noninteracting proteins in membranes: simulations and experiments.

Authors:  Christopher King; Sarvenaz Sarabipour; Patrick Byrne; Daniel J Leahy; Kalina Hristova
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

Review 7.  Membrane microheterogeneity: Förster resonance energy transfer characterization of lateral membrane domains.

Authors:  Luís M S Loura; Fábio Fernandes; Manuel Prieto
Journal:  Eur Biophys J       Date:  2009-10-21       Impact factor: 1.733

8.  Resonance energy transfer in a model system of membranes: application to gel and liquid crystalline phases.

Authors:  L M Loura; A Fedorov; M Prieto
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

9.  Understanding the FRET Signatures of Interacting Membrane Proteins.

Authors:  Christopher King; Valerica Raicu; Kalina Hristova
Journal:  J Biol Chem       Date:  2017-02-09       Impact factor: 5.157

10.  Membrane Protein Dimerization in Cell-Derived Lipid Membranes Measured by FRET with MC Simulations.

Authors:  Jan Škerle; Jana Humpolíčková; Nicholas Johnson; Petra Rampírová; Edita Poláchová; Monika Fliegl; Jan Dohnálek; Anna Suchánková; David Jakubec; Kvido Strisovsky
Journal:  Biophys J       Date:  2020-03-29       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.