Literature DB >> 11730017

DNA probes using fluorescence resonance energy transfer (FRET): designs and applications.

V V Didenko1.   

Abstract

Fluorescence resonance energy transfer (FRET) is widely used in biomedical research as a reporter method. Oligonucleotides with a DNA backbone and one or several chromophore tags have found multiple applications as FRET probes. They are especially advantageous for the real-time monitoring of biochemical reactions and in vivo studies. This paper reviews the design and applications of various DNA-based probes that use FRET The approaches used in the design of new DNA FRET probes are discussed.

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Year:  2001        PMID: 11730017      PMCID: PMC1941713          DOI: 10.2144/01315rv02

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  87 in total

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Authors:  X Liu; W Tan
Journal:  Anal Chem       Date:  1999-11-15       Impact factor: 6.986

2.  Molecular beacons for DNA biosensors with micrometer to submicrometer dimensions.

Authors:  X Liu; W Farmerie; S Schuster; W Tan
Journal:  Anal Biochem       Date:  2000-07-15       Impact factor: 3.365

3.  A homogeneous, ligase-mediated DNA diagnostic test.

Authors:  X Chen; K J Livak; P Y Kwok
Journal:  Genome Res       Date:  1998-05       Impact factor: 9.043

Review 4.  Fluorescence resonance energy transfer.

Authors:  R M Clegg
Journal:  Curr Opin Biotechnol       Date:  1995-02       Impact factor: 9.740

5.  Energy transfer primers: a new fluorescence labeling paradigm for DNA sequencing and analysis.

Authors:  J Ju; A N Glazer; R A Mathies
Journal:  Nat Med       Date:  1996-02       Impact factor: 53.440

6.  Loss of heterozygosity assay for molecular detection of cancer using energy-transfer primers and capillary array electrophoresis.

Authors:  I L Medintz; C C Lee; W W Wong; K Pirkola; D Sidransky; R A Mathies
Journal:  Genome Res       Date:  2000-08       Impact factor: 9.043

7.  Analysis of fluorescence energy transfer in duplex and branched DNA molecules.

Authors:  J P Cooper; P J Hagerman
Journal:  Biochemistry       Date:  1990-10-02       Impact factor: 3.162

8.  Specific detection and quantitation of SCC antigen 1 and SCC antigen 2 mRNAs by fluorescence-based asymmetric semi-nested reverse transcription PCR.

Authors:  A Murakami; Y Suminami; Y Sakaguchi; S Nawata; F Numa; F Kishi; H Kato
Journal:  Tumour Biol       Date:  2000 Jul-Aug

9.  Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase.

Authors:  P M Holland; R D Abramson; R Watson; D H Gelfand
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

10.  Detection of undegraded oligonucleotides in vivo by fluorescence resonance energy transfer. Nuclease activities in living sea urchin eggs.

Authors:  H Uchiyama; K Hirano; M Kashiwasake-Jibu; K Taira
Journal:  J Biol Chem       Date:  1996-01-05       Impact factor: 5.157

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  65 in total

Review 1.  Real-time PCR in virology.

Authors:  Ian M Mackay; Katherine E Arden; Andreas Nitsche
Journal:  Nucleic Acids Res       Date:  2002-03-15       Impact factor: 16.971

2.  MagiProbe: a novel fluorescence quenching-based oligonucleotide probe carrying a fluorophore and an intercalator.

Authors:  Akio Yamane
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

3.  iFRET: an improved fluorescence system for DNA-melting analysis.

Authors:  W Mathias Howell; Magnus Jobs; Anthony J Brookes
Journal:  Genome Res       Date:  2002-09       Impact factor: 9.043

4.  In vitro assembly of semi-artificial molecular machine and its use for detection of DNA damage.

Authors:  Candace L Minchew; Vladimir V Didenko
Journal:  J Vis Exp       Date:  2012-01-11       Impact factor: 1.355

Review 5.  The concept of λ-ratiometry in fluorescence sensing and imaging.

Authors:  Alexander P Demchenko
Journal:  J Fluoresc       Date:  2010-04-01       Impact factor: 2.217

6.  Allelic clustering and ancestry-dependent frequencies of rs6232, rs6234, and rs6235 PCSK1 SNPs in a Northern Ontario population sample.

Authors:  Francine Sirois; Nadine Kaefer; Krista A Currie; Michel Chrétien; Kabwe K Nkongolo; Majambu Mbikay
Journal:  J Community Genet       Date:  2012-02-04

Review 7.  Emerging applications of phosphorescent metalloporphyrins.

Authors:  Dmitri B Papkovsky; Tomás C O'Riordan
Journal:  J Fluoresc       Date:  2005-07       Impact factor: 2.217

8.  Express FRET Labeling and Analysis of Phagocytic Clearance.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2017

9.  Multiplex real-time PCR melting curve assay to detect drug-resistant mutations of Mycobacterium tuberculosis.

Authors:  Tao Luo; Lili Jiang; Weiming Sun; G Fu; Jian Mei; Qian Gao
Journal:  J Clin Microbiol       Date:  2011-07-13       Impact factor: 5.948

10.  Imaging mRNA expression levels in living cells with PNA·DNA binary FRET probes delivered by cationic shell-crosslinked nanoparticles.

Authors:  Zhenghui Wang; Ke Zhang; Yuefei Shen; Jillian Smith; Sharon Bloch; Samuel Achilefu; Karen L Wooley; John-Stephen Taylor
Journal:  Org Biomol Chem       Date:  2013-03-28       Impact factor: 3.876

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