Literature DB >> 7162994

An algorithm for the display of nucleic acid secondary structure.

G Lapalme, R J Cedergren, D Sankoff.   

Abstract

A simple algorithm is presented for the graphic display of nucleic acid secondary structure. Examples of secondary structure displays are given for tRNA, 5S RNA and part of the 16S RNA. Due to its speed, this algorithm could easily be used in conjunction with secondary structure programs which calculate various alternate structures.

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Year:  1982        PMID： 7162994      PMCID： PMC327091          DOI： 10.1093/nar/10.24.8351

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  6 in total

1.  STRUCTURE OF A RIBONUCLEIC ACID.

Authors:  R W HOLLEY; J APGAR; G A EVERETT; J T MADISON; M MARQUISEE; S H MERRILL; J R PENSWICK; A ZAMIR
Journal:  Science       Date:  1965-03-19       Impact factor: 47.728

2.  Computer-aided prediction of RNA secondary structures.

Authors:  P E Auron; W P Rindone; C P Vary; J J Celentano; J N Vournakis
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

3.  Secondary structure model for 23S ribosomal RNA.

Authors:  H F Noller; J Kop; V Wheaton; J Brosius; R R Gutell; A M Kopylov; F Dohme; W Herr; D A Stahl; R Gupta; C R Waese
Journal:  Nucleic Acids Res       Date:  1981-11-25       Impact factor: 16.971

Review 4.  The evolving tRNA molecule.

Authors:  R J Cedergren; D Sankoff; B LaRue; H Grosjean
Journal:  CRC Crit Rev Biochem       Date:  1981

5.  Secondary structure and evolution of ribosomal RNA.

Authors:  R Brimacombe
Journal:  Nature       Date:  1981-11-19       Impact factor: 49.962

6.  Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs.

Authors:  C Branlant; A Krol; M A Machatt; J Pouyet; J P Ebel; K Edwards; H Kössel
Journal:  Nucleic Acids Res       Date:  1981-09-11       Impact factor: 16.971
  6 in total
  2 in total

1.  Glanzmann thrombasthenia. Cooperation between sequence variants in cis during splice site selection.

Authors:  Y Jin; H C Dietz; R A Montgomery; W R Bell; I McIntosh; B Coller; P F Bray
Journal:  J Clin Invest       Date:  1996-10-15       Impact factor: 14.808

2.  Archetypical features in tRNA families.

Authors:  K Nicoghosian; M Bigras; D Sankoff; R Cedergren
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395
  2 in total

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