Literature DB >> 7154084

Mechanics of sequence-dependent stacking of bases in B-DNA.

C R Calladine.   

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Year:  1982        PMID： 7154084     DOI： 10.1016/0022-2836(82)90157-7

Source DB:  PubMed          Journal:  J Mol Biol        ISSN： 0022-2836            Impact factor:   5.469


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  107 in total

1.  Local conformational variations observed in B-DNA crystals do not improve base stacking: computational analysis of base stacking in a d(CATGGGCCCATG)(2) B<-->A intermediate crystal structure.

Authors:  J Poner; J Florián; H L Ng; J E Poner; N Packová
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

2.  Sequence-dependent folding of DNA three-way junctions.

Authors:  René Assenberg; Anthony Weston; Don L N Cardy; Keith R Fox
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

3.  RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication.

Authors:  M S Caddle; L Dailey; N H Heintz
Journal:  Mol Cell Biol       Date:  1990-12       Impact factor: 4.272

4.  Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.

Authors:  Surjit B Dixit; Mihaly Mezei; David L Beveridge
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

5.  Sequence-dependent Kink-and-Slide deformations of nucleosomal DNA facilitated by histone arginines bound in the minor groove.

Authors:  Difei Wang; Nikolai B Ulyanov; Victor B Zhurkin
Journal:  J Biomol Struct Dyn       Date:  2010-06

6.  Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.

Authors:  Kevin M Guckian; Barbara A Schweitzer; Rex X-F Ren; Charles J Sheils; Deborah C Tahmassebi; Eric T Kool
Journal:  J Am Chem Soc       Date:  2000-02-10       Impact factor: 15.419

7.  Does TATA matter? A structural exploration of the selectivity determinants in its complexes with TATA box-binding protein.

Authors:  N Pastor; L Pardo; H Weinstein
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

8.  The 31P-NMR spectrum of the dodecamer d(GACGATATCGTC).

Authors:  J Ott; F Eckstein; B A Connolly
Journal:  Nucleic Acids Res       Date:  1985-09-11       Impact factor: 16.971

9.  Structure of a pleiomeric form of poly d(AT):poly d(AT).

Authors:  R P Millane; J K Walker; S Arnott; R Chandrasekaran; D L Birdsall; R L Ratliff
Journal:  Nucleic Acids Res       Date:  1984-07-11       Impact factor: 16.971

10.  Sequence dependence of base-pair stacking in right-handed DNA in solution: proton nuclear Overhauser effect NMR measurements.

Authors:  D J Patel; S A Kozlowski; R Bhatt
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205
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