Literature DB >> 7063420

Computational studies of polynucleotide flexibility.

W K Olson.   

Abstract

Details of polynucleotide flexibility may be probed through a combination of semiempirical potential energy calculations and statistical mechanical analyses. The pseudorotational motions of the furanose and the long-range correlated rotations of the chain backbone are described briefly here.

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Year:  1982        PMID： 7063420      PMCID： PMC326202          DOI： 10.1093/nar/10.3.777

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  13 in total

1.  Proton and phosphorus NMR studies of d-CpG(pCpG)n duplexes in solution. Helix-coil transition and complex formation with actinomycin-D.

Authors:  D J Patel
Journal:  Biopolymers       Date:  1976-03       Impact factor: 2.505

2.  The conformation of polyriboadenylic acid at low temperature and neutral pH. A single-stranded rodlike structure.

Authors:  B S Stannard; G Felsenfeld
Journal:  Biopolymers       Date:  1975-02       Impact factor: 2.505

3.  [Examination by the molecular orbital method of the intrinsic conformation preferences of nucleic acid sequence].

Authors:  H Broch; D Vasilescu
Journal:  Biopolymers       Date:  1979-04       Impact factor: 2.505

4.  Spatial configuration of single-stranded polynucleotides. Calculations of average dimensions and Nmr coupling constants.

Authors:  R Tewari; R K Nanda; G Govil
Journal:  Biopolymers       Date:  1974       Impact factor: 2.505

5.  Syn-anti effects on the spatial configuration of polynucleotide chains.

Authors:  W K Olson
Journal:  Biopolymers       Date:  1973       Impact factor: 2.505

6.  Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudorotation.

Authors:  C Altona; M Sundaralingam
Journal:  J Am Chem Soc       Date:  1972-11-15       Impact factor: 15.419

7.  Spatial configuration of polynucleotide chains. II. Conformational energies and the average dimensions of polyribonucleotides.

Authors:  W K Olson; P J Flory
Journal:  Biopolymers       Date:  1972-01       Impact factor: 2.505

8.  DNA double helical fragment at atomic resolution.

Authors:  M A Viswamitra; O Kennard; P G Jones; G M Sheldrick; S Salisbury; L Favello; Z Shakked
Journal:  Nature       Date:  1978-06-22       Impact factor: 49.962

9.  Temperature dependence of the 31P chemical shifts of nucleic acids. A prode of phosphate ester torsional conformations.

Authors:  D G Gorenstein; J B Findlay; R K Momii; B A Luxon; D Kar
Journal:  Biochemistry       Date:  1976-08-24       Impact factor: 3.162

10.  A conformational study of nucleic acid phosphate ester bonds using phosphorus-31 nuclear magnetic resonance.

Authors:  C A Haasnoot; C Altona
Journal:  Nucleic Acids Res       Date:  1979-03       Impact factor: 16.971
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  4 in total

1.  Conformations and dynamics of Ets-1 ETS domain-DNA complexes.

Authors:  Swarnalatha Y Reddy; Satoshi Obika; Thomas C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

2.  Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure.

Authors:  Leven M Wadley; Kevin S Keating; Carlos M Duarte; Anna Marie Pyle
Journal:  J Mol Biol       Date:  2007-06-27       Impact factor: 5.469

3.  Base-pair opening and spermine binding--B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition.

Authors:  L W Tari; A S Secco
Journal:  Nucleic Acids Res       Date:  1995-06-11       Impact factor: 16.971

4.  A new way to see RNA.

Authors:  Kevin S Keating; Elisabeth L Humphris; Anna Marie Pyle
Journal:  Q Rev Biophys       Date:  2011-05-18       Impact factor: 5.318
  4 in total

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