Literature DB >> 7044422

Stabilization of the tertiary structure of yeast phenylalanine tRNA by [Co(NH3)6]3+. X-ray evidence for hydrogen bonding to pairs of guanine bases in the major groove.

B E Hingerty, R S Brown, A Klug.   

Abstract

The sites of three [Co(NH3)6]3+ ions bound to the phenylalanine tRNA of yeast have been determined by X-ray diffraction analysis. [Co(NH3)6]3+ binds to purine-purine sequences in yeast tRNA Phe. It is different from the binding fo Co2+, which binds to the base and phosphate of residue G15. There are no direct metal-nucleotide bonds, although hydrogen bonding of the coordinated ammines to double-helical guanylguanosine sequences in the major groove and to phosphate oxygen in neighboring polynucleotide strands increases the stability of the structure. Hydrogen-bonding appears to be via cis ammine ligands to N(7) and O(6) positions of adjacent purine bases.

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Year:  1982        PMID: 7044422     DOI: 10.1016/0167-4781(82)90047-1

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  7 in total

1.  Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.

Authors:  H Robinson; Y G Gao; R Sanishvili; A Joachimiak; A H Wang
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

2.  Direct evidence for the presence of left-handed conformation in a supramolecular assembly of polynucleotides.

Authors:  T J Thomas; T Thomas
Journal:  Nucleic Acids Res       Date:  1989-05-25       Impact factor: 16.971

3.  Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA.

Authors:  Y G Gao; H Robinson; J H van Boom; A H Wang
Journal:  Biophys J       Date:  1995-08       Impact factor: 4.033

4.  DNA bending by small, mobile multivalent cations.

Authors:  I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

5.  Similar binding of the carcinostatic drugs cis-[Pt(NH3)2Cl2] and [Ru(NH3)5Cl] Cl2 to tRNAphe and a comparison with the binding of the inactive trans-[Pt(NH3)2Cl2] complex - reluctance in binding to Watson-Crick base pairs within double helix.

Authors:  J R Rubin; M Sabat; M Sundaralingam
Journal:  Nucleic Acids Res       Date:  1983-09-24       Impact factor: 16.971

6.  Induction of B-A transitions of deoxyoligonucleotides by multivalent cations in dilute aqueous solution.

Authors:  Q Xu; R K Shoemaker; W H Braunlin
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

7.  Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactor.

Authors:  Simona Cuzic; Roland K Hartmann
Journal:  Nucleic Acids Res       Date:  2005-05-02       Impact factor: 16.971

  7 in total

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