Literature DB >> 7029537

Total synthesis of a RNA molecule with sequence identical to that of Escherichia coli formylmethionine tRNA.

E Ohtsuka, S Tanaka, T Tanaka, T Miyake, A F Markham, E Nakagawa, T Wakabayashi, Y Taniyama, S Nishikawa, R Fukumoto, H Uemura, T Doi, T Tokunaga, M Ikehara.   

Abstract

A RNA molecule has been synthesized that is identical in sequence to Escherichia coli tRNAfMet except that it lacks the base modifications present in the E. coli tRNA. This was achieved by enzymatic joining of chemically synthesized oligonucleotides with chain lengths of 3-10 which were synthesized by the phosphodiester or phosphotriester method. First, quarter molecules of tRNA were constructed by joining of chemically synthesized fragments with RNA ligase. The 5'-quarter molecule (bases 1-20) served as an acceptor in joining reactions with the 3',5'-bisphosphorylated donor molecule (bases 21-34). The 5'-half molecule thus obtained was treated with phosphatase and joined to the 3'-half molecule which was prepared by ligation of the other quarter molecules (bases 35-60, acceptor; bases 61-77, donor) followed by 5'-phosphorylation with polynucleotide kinase. The synthetic tRNA was characterized by oligonucleotide pattern and was partially active in aminoacylation with E. coli methionyl-tRNA synthetase.

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Year:  1981        PMID: 7029537      PMCID: PMC348772          DOI: 10.1073/pnas.78.9.5493

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  STRUCTURE OF A RIBONUCLEIC ACID.

Authors:  R W HOLLEY; J APGAR; G A EVERETT; J T MADISON; M MARQUISEE; S H MERRILL; J R PENSWICK; A ZAMIR
Journal:  Science       Date:  1965-03-19       Impact factor: 47.728

2.  Studies on polynucleotides. 103. Total synthesis of the structural gene for an alanine transfer ribonucleic acid from yeast.

Authors:  H G Khorana; K L Agarwal; H Büchi; M H Caruthers; N K Gupta; K Kleppe; A Kumar; E Otsuka; U L RajBhandary; J H Van de Sande; V Sgaramella; T Terao; H Weber; T Yamada
Journal:  J Mol Biol       Date:  1972-12-28       Impact factor: 5.469

3.  Absence of the sequence G-T-psi-C-G(A)- in several eukaryotic cytoplasmic initiator transfer RNAs.

Authors:  M Simsek; J Ziegenmeyer; J Heckman; U L Rajbhandary
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

4.  5 s RNA conformation. Studies of its partial T 1 ribonuclease digestion by gel electrophoresis and two-dimensional thin-layer chromatography.

Authors:  A D Mirzabekov; B E Griffin
Journal:  J Mol Biol       Date:  1972-12-30       Impact factor: 5.469

Review 5.  Minor components in transfer RNA: their characterization, location, and function.

Authors:  S Nishimura
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1972

6.  Chromatography of 32P-labelled oligonucleotides on thin layers of DEAE-cellulose.

Authors:  G G Brownlee; F Sanger
Journal:  Eur J Biochem       Date:  1969-12

7.  Recovery of transfer RNA functions by combining fragmented Escherichia coli formylmethionine transfer RNA.

Authors:  T Seno; M Kobayashi; S Nishimura
Journal:  Biochim Biophys Acta       Date:  1969-10-22

8.  T4-induced RNA ligase joins single-stranded oligoribonucleotides.

Authors:  G C Walker; O C Uhlenbeck; E Bedows; R I Gumport
Journal:  Proc Natl Acad Sci U S A       Date:  1975-01       Impact factor: 11.205

9.  DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping.

Authors:  E Jay; R Bambara; R Padmanabhan; R Wu
Journal:  Nucleic Acids Res       Date:  1974-03       Impact factor: 16.971

10.  Purification and properties of bacteriophage T4-induced RNA ligase.

Authors:  R Silber; V G Malathi; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1972-10       Impact factor: 11.205

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  11 in total

1.  Molecular design of a eukaryotic messenger RNA and its chemical synthesis.

Authors:  R Iwase; M Maeda; T Fujiwara; M Sekine; T Hata; K Miura
Journal:  Nucleic Acids Res       Date:  1992-04-11       Impact factor: 16.971

2.  Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro.

Authors:  J R Sampson; O C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

3.  Enzymatic replacement in vitro of the first anticodon base of yeast tRNAAsp: application to the study of tRNA maturation in vivo, after microinjection into frog oocytes.

Authors:  P Carbon; E Haumont; S De Henau; G Keith; H Grosjean
Journal:  Nucleic Acids Res       Date:  1982-06-25       Impact factor: 16.971

Review 4.  Recent developments in the chemical synthesis of polynucleotides.

Authors:  E Ohtsuka; M Ikehara; D Söll
Journal:  Nucleic Acids Res       Date:  1982-11-11       Impact factor: 16.971

5.  Replacement and insertion of nucleotides at the anticodon loop of E. coli tRNAMetf by ligation of chemically synthesized ribooligonucleotides.

Authors:  T Doi; A Yamane; J Matsugi; E Ohtsuka; M Ikehara
Journal:  Nucleic Acids Res       Date:  1985-05-24       Impact factor: 16.971

6.  E. coli initiator tRNA analogs with different nucleotides in the discriminator base position.

Authors:  H Uemura; M Imai; E Ohtsuka; M Ikehara; D Söll
Journal:  Nucleic Acids Res       Date:  1982-10-25       Impact factor: 16.971

7.  Chemical synthesis of a biologically active natural tRNA with its minor bases.

Authors:  D Gasparutto; T Livache; H Bazin; A M Duplaa; A Guy; A Khorlin; D Molko; A Roget; R Téoule
Journal:  Nucleic Acids Res       Date:  1992-10-11       Impact factor: 16.971

8.  Total chemical synthesis of a 77-nucleotide-long RNA sequence having methionine-acceptance activity.

Authors:  K K Ogilvie; N Usman; K Nicoghosian; R J Cedergren
Journal:  Proc Natl Acad Sci U S A       Date:  1988-08       Impact factor: 11.205

9.  Base substitutions in the wobble position of the anticodon inhibit aminoacylation of E. coli tRNAfMet by E. coli Met-tRNA synthetase.

Authors:  L H Schulman; H Pelka; M Susani
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

10.  Modification of the anticodon triplet of E.coli tRNAMetf by replacement with trimers complementary to non-sense codons UAG and UAA.

Authors:  E Ohtsuka; T Doi; R Fukumoto; J Matsugi; M Ikehara
Journal:  Nucleic Acids Res       Date:  1983-06-25       Impact factor: 16.971

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